NGSToolKit: RNA-Seq Analysis and Genome Visualization 'Shiny' Platform
Interactive 'Shiny' web application for comprehensive RNA-Seq data
analysis, quality control, differential expression analysis with 'DESeq2',
dimensionality reduction (PCA, t-SNE, UMAP), clustering, and integrated
'JBrowse 2' genome visualization. For differential expression analysis
methods, see Love (2014) <doi:10.1186/s13059-014-0550-8>.
| Version: |
0.1.4 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
shiny (≥ 1.7.0), shinydashboard (≥ 0.7.0), shinyjs (≥
2.1.0), shinycssloaders (≥ 1.0.0), DT (≥ 0.20), ggplot2 (≥
3.3.0), DESeq2, SummarizedExperiment, uwot, Rtsne, pheatmap, reshape2, Rsamtools, tools, jsonlite, utils, stats, graphics, grDevices |
| Suggests: |
testthat (≥ 3.0.0) |
| Published: |
2026-09-12 |
| DOI: |
10.32614/CRAN.package.NGSToolKit (may not be active yet) |
| Author: |
Sona Charles [aut, cre],
Febin T Nabeel [aut],
T E Sheeja [aut] |
| Maintainer: |
Sona Charles <sonacharlesicar at gmail.com> |
| BugReports: |
https://github.com/bigfacilityiisr/NGS-Tool-Kit/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/bigfacilityiisr/NGS-Tool-Kit |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
NGSToolKit results |
Documentation:
Downloads:
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