CRAN Package Check Results for Maintainer ‘Martin R. Smith <martin.smith at durham.ac.uk>’

Last updated on 2025-07-24 13:49:46 CEST.

Package ERROR NOTE OK
CongreveLamsdell2016 13
PlotTools 13
Quartet 13
Rogue 13
TBRDist 13
Ternary 3 10
TotalCopheneticIndex 2 11
TreeDist 3 10
TreeSearch 7 2 4
TreeTools 2 11

Package CongreveLamsdell2016

Current CRAN status: OK: 13

Package PlotTools

Current CRAN status: OK: 13

Package Quartet

Current CRAN status: OK: 13

Package Rogue

Current CRAN status: OK: 13

Additional issues

rchk

Package TBRDist

Current CRAN status: NOTE: 13

Version: 1.0.2
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. The Description field contains using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.0.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package Ternary

Current CRAN status: NOTE: 3, OK: 10

Version: 2.3.4
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: doc 5.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TotalCopheneticIndex

Current CRAN status: NOTE: 2, OK: 11

Version: 2.0.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Martin R. Smith <martin.smith@durham.ac.uk>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package TreeDist

Current CRAN status: NOTE: 3, OK: 10

Version: 2.9.2
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘TreeDistData’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 2.9.2
Check: installed package size
Result: NOTE installed size is 9.0Mb sub-directories of 1Mb or more: doc 4.9Mb libs 3.4Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package TreeSearch

Current CRAN status: ERROR: 7, NOTE: 2, OK: 4

Version: 1.6.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [37s/41s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 4 | PASS 7331 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 4 | PASS 7331 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.6.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [103s/204s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' • Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.6.1
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [98s/172s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' • Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.6.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [50s] Running the tests in 'tests/testthat.R' failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' • Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 1.6.1
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [61s/79s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 4 | PASS 7331 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 4 | PASS 7331 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.6.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [52s] Running the tests in 'tests/testthat.R' failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' • Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 1.6.1
Check: installed package size
Result: NOTE installed size is 6.2Mb sub-directories of 1Mb or more: datasets 1.6Mb doc 1.3Mb libs 1.6Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.6.1
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [78s] Running the tests in 'tests/testthat.R' failed. Complete output: > library("testthat") > library("TreeSearch") > > test_check("TreeSearch") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-Jackknife.R:42:3', 'test-PlotCharacter.R:46:7', 'test-PlotCharacter.R:143:3', 'test-PlotCharacter.R:177:3' • Sys.getenv("GITHUB_PAT") == "" is TRUE (1): 'test-MaximizeParsimony.R:71:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-CustomSearch.R:32:3'): Tree can be found ───────────────────── all.equal(...) is not TRUE `actual`: FALSE `expected`: TRUE [ FAIL 1 | WARN 0 | SKIP 5 | PASS 7330 ] Deleting unused snapshots: • PlotCharacter/plotchar-000011110000.svg • PlotCharacter/plotchar-000011qqqq00.svg • PlotCharacter/plotchar-011iiqii0011.svg • PlotCharacter/plotchar-01iii1010101.svg • PlotCharacter/plotchar-01iiii010101.svg • PlotCharacter/plotchar-01iiiiii0101.svg • PlotCharacter/plotchar-023iiqq1ii32.svg • PlotCharacter/plotchar-023iqqq1ii32.svg • PlotCharacter/plotchar-10101iiiii01.svg • PlotCharacter/plotchar-10iiii11iii1.svg • PlotCharacter/plotchar-1100iiii1100.svg • PlotCharacter/plotchar-110iiqiii100.svg • PlotCharacter/plotchar-110iiqqii100.svg • PlotCharacter/plotchar-11ii1000001i.svg • PlotCharacter/plotchar-11ii1qqii111.svg • PlotCharacter/plotchar-11iiii111111.svg • PlotCharacter/plotchar-11iiiiiii100.svg • PlotCharacter/plotchar-11iiqqqqii11.svg • PlotCharacter/plotchar-1234d45baacgttt.svg • PlotCharacter/plotchar-1iii1111iii1.svg • PlotCharacter/plotchar-1iiii1iiii1i.svg • PlotCharacter/plotchar-1qqiiqqii100.svg • PlotCharacter/plotchar-210210iiiiii.svg • PlotCharacter/plotchar-210ii100ii21.svg • PlotCharacter/plotchar-21ii1iiii012.svg • PlotCharacter/plotchar-21ii3qqii032.svg • PlotCharacter/plotchar-230iiqq1ii32.svg • PlotCharacter/plotchar-23ii1iiii032.svg • PlotCharacter/plotchar-23ii1q1ii023.svg • PlotCharacter/plotchar-23ii1qqdi0bid01b32.svg • PlotCharacter/plotchar-23qq1qqqq032.svg • PlotCharacter/plotchar-320iiqq3ii21.svg • PlotCharacter/plotchar-i1i1i1ii1i1i.svg • PlotCharacter/plotchar-iiii1010iiii.svg • PlotCharacter/plotchar-iiii1111iii1.svg • PlotCharacter/plotchar-iiii1111iiii.svg • PlotCharacter/plotchar-iiiiii11iii1.svg • PlotCharacter/plotchar-iiiiiiii0101.svg • PlotCharacter/plotchar-iiiiiiiiiiii.svg • PlotCharacter/plotchar-iiiiiiiqqqqq.svg • PlotCharacter/plotchar-invar-ambig.svg • PlotCharacter/plotchar-invariant.svg • PlotCharacter/plotchar-qqqqiiii1qqq.svg • PlotCharacter/plotchar-qqqqqqqqqqqq.svg Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Package TreeTools

Current CRAN status: NOTE: 2, OK: 11

Version: 1.14.0
Check: installed package size
Result: NOTE installed size is 6.2Mb sub-directories of 1Mb or more: R 1.1Mb libs 3.9Mb Flavor: r-oldrel-macos-arm64

Version: 1.15.0
Check: installed package size
Result: NOTE installed size is 5.7Mb sub-directories of 1Mb or more: R 1.1Mb libs 3.5Mb Flavor: r-oldrel-macos-x86_64