strollur: Store and Transfer Amplicon Sequence Data
Stores the data associated with your amplicon sequence analysis. This includes nucleotide sequences, abundance, sample and treatment assignments, taxonomic classifications, asv, otu and phylotype clusters, metadata, trees and various reports. It is designed to facilitate data analysis across multiple R packages with utility functions to read / write from 'mothur', 'qiime2', 'dada2', and 'phyloseq'.
| Version: | 0.1.2 |
| Depends: | R (≥ 4.5.0) |
| Imports: | Rcpp, cli, methods, microseq, R.utils, R6, waldo, readr, ape, dplyr, tidyr, yaml, rbiom (≥ 3.1.0), stats, utils |
| LinkingTo: | Rcpp, cli, Rcereal |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), xml2, phyloseq, ggplot2, phylotypr, rhdf5, h5lite, pak |
| Published: | 2026-06-24 |
| DOI: | 10.32614/CRAN.package.strollur (may not be active yet) |
| Author: | Sarah Westcott 
[aut],
Gregory Johnson
[aut],
Pat Schloss [cph,
cre] |
| Maintainer: | Pat Schloss <pschloss at umich.edu> |
| BugReports: | https://github.com/mothur/strollur/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/mothur/strollur, https://mothur.org/strollur/ |
| NeedsCompilation: | yes |
| Citation: | strollur citation info |
| Materials: | README, NEWS |
| CRAN checks: | strollur results |
Documentation:
| Reference manual: | strollur.html , strollur.pdf |
| Vignettes: |
Accessing Data (source, R code) Data Transfers (source, R code) Example Analysis Across Software Tools (source, R code) Functions for package developers (source, R code) General Importing (source, R code) Importing from mothur (source, R code) Importing from phyloseq (source, R code) Importing from qiime2 (source, R code) Getting Started (source, R code) |
Downloads:
| Package source: | strollur_0.1.2.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): strollur_0.1.2.tgz, r-oldrel (arm64): strollur_0.1.2.tgz, r-release (x86_64): strollur_0.1.2.tgz, r-oldrel (x86_64): strollur_0.1.2.tgz |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=strollur to link to this page.