Computational infrastructure for biogeography, community ecology,
and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>.
It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>.
The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013>
on patterns and processes of biogeographical regionalization. Additionally, the package
contains fast and efficient functions to compute more standard conservation measures
such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness
and global endangerment, as well as compositional turnover (e.g., beta diversity),
and functional alpha and beta diversity from trait probability densities for mixed
continuous and categorical traits (Carmona et al. 2016) <doi:10.1016/j.tree.2016.02.003>.
| Version: |
2.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
ape, phangorn, Matrix, betapart, parallel, methods, colorspace, igraph, clustMixType, maptpx, terra, vegan, predicts, smoothr |
| Suggests: |
tinytest, knitr, rmarkdown, mapproj, survival, rJava, phyloseq, V8 |
| Published: |
2026-11-14 |
| DOI: |
10.32614/CRAN.package.phyloregion |
| Author: |
Barnabas H. Daru 
[aut, cre, cph],
Piyal Karunarathne
[aut],
Klaus Schliep
[aut],
Xiaobei Zhao [ctb],
Albin Sandelin [ctb],
Luciano Pataro [ctb],
Liu Rong [ctb] |
| Maintainer: |
Barnabas H. Daru <darunabas at gmail.com> |
| BugReports: |
https://github.com/darunabas/phyloregion/issues |
| License: |
AGPL-3 |
| URL: |
https://github.com/darunabas/phyloregion,
https://phyloregion.com/index.html |
| NeedsCompilation: |
no |
| Citation: |
phyloregion citation info |
| Materials: |
README, NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
phyloregion results |