A 'shiny' app that supports both dual and bulk RNA-seq, with the dual RNA-seq functionality offering the flexibility to perform either a sequential approach (where reads are mapped separately to each genome) or a combined approach (where reads are aligned to a single merged genome). The user-friendly interface automates the analysis process, providing step-by-step guidance, making it easy for users to navigate between different analysis steps, and download intermediate results and publication-ready plots.
| Version: | 1.0.0 |
| Imports: | bigtabulate, BiocGenerics, Biostrings, bsicons, bslib, callr, checkmate, data.table, dplyr, DT, edgeR, fs, ggplot2, ggrepel, grDevices, heatmaply, Hmisc, htmltools, HTSFilter, limma, magrittr, matrixStats, memuse, methods, paletteer, parallel, pheatmap, plotly, R.devices, readr, reshape2, Rfastp, rintrojs, Rsamtools, Rsubread, rtracklayer, S4Vectors, seqinr, shiny, shinycssloaders, shinyFiles, shinyjs, shinyWidgets, ShortRead, spsComps, stats, tibble, tidyr, tools, upsetjs, UpSetR, utils, XVector |
| Suggests: | testthat (≥ 3.0.0) |
| Published: | 2025-07-05 |
| DOI: | 10.32614/CRAN.package.inDAGO |
| Author: | Carmine Fruggiero [aut, cre], Gaetano Aufiero [aut] |
| Maintainer: | Carmine Fruggiero <fruggierocarmine3 at gmail.com> |
| BugReports: | https://github.com/inDAGOverse/inDAGO/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/inDAGOverse/inDAGO |
| NeedsCompilation: | no |
| CRAN checks: | inDAGO results |
| Reference manual: | inDAGO.html , inDAGO.pdf |
| Package source: | inDAGO_1.0.0.tar.gz |
| Windows binaries: | r-devel: inDAGO_1.0.0.zip, r-release: inDAGO_1.0.0.zip, r-oldrel: inDAGO_1.0.0.zip |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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