hestia: Bayesian Compartmental Infection Models from Individual Outcomes

Fit Bayesian compartmental infection models (such as susceptible-infected-recovered and multi-compartment hidden Markov variants) from individual-level outcome data. Models are composed from infection-process and observation-process components and fit using Stan via 'rstan'.

Version:	0.1.0
Depends:	R (≥ 4.1.0)
Imports:	checkmate, dplyr, flexstanr (≥ 0.2.0), methods, posterior, Rcpp (≥ 0.12.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), rstantools (≥ 2.5.0), stats, tidyr
LinkingTo:	BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppEigen (≥ 0.3.3.3.0), RcppParallel (≥ 5.0.1), rstan (≥ 2.18.1), StanHeaders (≥ 2.18.0)
Suggests:	bayesplot, ggplot2, knitr, lintr, patchwork, pkgload, rmarkdown, roxygen2, roxyglobals, spelling, testthat (≥ 3.0.0), withr
Published:	2026-10-20
DOI:	10.32614/CRAN.package.hestia (may not be active yet)
Author:	Claire Perrin Smith [aut, cre], Jack Goodall [aut]
Maintainer:	Claire Perrin Smith <clairesmith6995 at gmail.com>
BugReports:	https://github.com/ACCIDDA/hestia/issues
License:	MIT + file LICENSE
URL:	https://accidda.github.io/hestia/, https://github.com/ACCIDDA/hestia
NeedsCompilation:	yes
SystemRequirements:	GNU make
Language:	en-US
Citation:	hestia citation info
Materials:	README, NEWS
CRAN checks:	hestia results

Documentation:

Reference manual:	hestia.html , hestia.pdf
Vignettes:	Basic SIR Model (source, R code) Multiple Infection Compartments (source, R code) Parallel and threaded fitting (including HPC) (source, R code)

Downloads:

Package source:	hestia_0.1.0.tar.gz
Windows binaries:	r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries:	r-release (arm64): hestia_0.1.0.tgz, r-oldrel (arm64): hestia_0.1.0.tgz, r-release (x86_64): hestia_0.1.0.tgz, r-oldrel (x86_64): hestia_0.1.0.tgz

Linking:

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