BayesPIM: Bayesian Prevalence-Incidence Mixture Model

Models time-to-event data from interval-censored screening studies. It accounts for latent prevalence at baseline and incorporates misclassification due to imperfect test sensitivity. For usage details, see the package vignette "BayesPIM_intro". Further details can be found in Klausch, Lissenberg-Witte and Coupé (2026) <doi:10.1002/sim.70433>.

Version: 2.0
Depends: R (≥ 3.5.0), coda
Imports: Rcpp, MASS, doParallel, foreach, parallel, actuar, posterior, survival, flexsurv, graphics, grDevices, stats, utils
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, bookdown
Published: 2026-08-21
DOI: 10.32614/CRAN.package.BayesPIM
Author: Thomas Klausch [aut, cre]
Maintainer: Thomas Klausch <t.klausch at amsterdamumc.nl>
BugReports: https://github.com/thomasklausch2/BayesPIM/issues
License: MIT + file LICENSE
URL: https://github.com/thomasklausch2/BayesPIM
NeedsCompilation: yes
Language: en-US
Materials: README, NEWS
CRAN checks: BayesPIM results

Documentation:

Reference manual: BayesPIM.html , BayesPIM.pdf
Vignettes: BayesPIM: user guide (source, R code)

Downloads:

Package source: BayesPIM_2.0.tar.gz
Windows binaries: r-devel: BayesPIM_1.0.1.zip, r-release: BayesPIM_1.0.1.zip, r-oldrel: BayesPIM_2.0.zip
macOS binaries: r-release (arm64): BayesPIM_2.0.tgz, r-oldrel (arm64): BayesPIM_2.0.tgz, r-release (x86_64): BayesPIM_2.0.tgz, r-oldrel (x86_64): BayesPIM_2.0.tgz
Old sources: BayesPIM archive

Linking:

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