Last updated on 2026-08-01 23:50:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.1 | 7.19 | 271.32 | 278.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 5.14 | 162.76 | 167.90 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 12.00 | 431.37 | 443.37 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 171.68 | OK | |||
| r-devel-windows-x86_64 | 3.0.1 | 11.00 | 287.00 | 298.00 | OK | |
| r-patched-linux-x86_64 | 3.0.1 | 6.95 | 263.57 | 270.52 | OK | |
| r-release-linux-x86_64 | 3.0.1 | 7.10 | 136.88 | 143.98 | ERROR | |
| r-release-macos-arm64 | 3.0.1 | 2.00 | 109.00 | 111.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 5.00 | 310.00 | 315.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 11.00 | 298.00 | 309.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | 2.00 | 102.00 | 104.00 | OK | |
| r-oldrel-macos-x86_64 | 3.0.1 | 5.00 | 279.00 | 284.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 14.00 | 440.00 | 454.00 | OK |
Version: 3.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0ALisL’ ‘~/tmp/scratch/Rtmp0GtrNc’
‘~/tmp/scratch/Rtmp12eInU’ ‘~/tmp/scratch/Rtmp1I4oC5’
‘~/tmp/scratch/Rtmp1XXEeH’ ‘~/tmp/scratch/Rtmp1k6DXz’
‘~/tmp/scratch/Rtmp1oY9N3’ ‘~/tmp/scratch/Rtmp2EJ5yQ’
‘~/tmp/scratch/Rtmp2tHTnE’ ‘~/tmp/scratch/Rtmp3AbpRK’
‘~/tmp/scratch/Rtmp4g5Le9’ ‘~/tmp/scratch/Rtmp4nhWKK’
‘~/tmp/scratch/Rtmp57dTEd’ ‘~/tmp/scratch/Rtmp62kBqF’
‘~/tmp/scratch/Rtmp6Jw9eg’ ‘~/tmp/scratch/Rtmp6sLVS6’
‘~/tmp/scratch/Rtmp7E8kMM’ ‘~/tmp/scratch/Rtmp7I1b2s’
‘~/tmp/scratch/Rtmp7Nd290’ ‘~/tmp/scratch/Rtmp7fEJ7i’
‘~/tmp/scratch/Rtmp8jK42c’ ‘~/tmp/scratch/Rtmp8w2TMV’
‘~/tmp/scratch/Rtmp91X8ff’ ‘~/tmp/scratch/Rtmp9cNfAH’
‘~/tmp/scratch/Rtmp9leXVu’ ‘~/tmp/scratch/RtmpBugbVr’
‘~/tmp/scratch/RtmpBvoQqO’ ‘~/tmp/scratch/RtmpC3Fe7K’
‘~/tmp/scratch/RtmpCg0DdE’ ‘~/tmp/scratch/RtmpD4Z8Qs’
‘~/tmp/scratch/RtmpDIPIkm’ ‘~/tmp/scratch/RtmpDQBieZ’
‘~/tmp/scratch/RtmpDUYO7A’ ‘~/tmp/scratch/RtmpDqBB8y’
‘~/tmp/scratch/RtmpEF8Uci’ ‘~/tmp/scratch/RtmpEbrHSb’
‘~/tmp/scratch/RtmpEfLCaO’ ‘~/tmp/scratch/RtmpEqz7nD’
‘~/tmp/scratch/RtmpFA2SaJ’ ‘~/tmp/scratch/RtmpFBCze6’
‘~/tmp/scratch/RtmpFRLrNm’ ‘~/tmp/scratch/RtmpFlQotG’
‘~/tmp/scratch/RtmpFnq2SE’ ‘~/tmp/scratch/RtmpGQJabM’
‘~/tmp/scratch/RtmpGhRThM’ ‘~/tmp/scratch/RtmpH7J4sQ’
‘~/tmp/scratch/RtmpHCHxDg’ ‘~/tmp/scratch/RtmpHHVj1x’
‘~/tmp/scratch/RtmpHMBoLS’ ‘~/tmp/scratch/RtmpIK2gHz’
‘~/tmp/scratch/RtmpITGbkg’ ‘~/tmp/scratch/RtmpIiU42I’
‘~/tmp/scratch/RtmpJ4chA6’ ‘~/tmp/scratch/RtmpJWgH8C’
‘~/tmp/scratch/RtmpJZnTca’ ‘~/tmp/scratch/RtmpKAdQav’
‘~/tmp/scratch/RtmpKMJhLS’ ‘~/tmp/scratch/RtmpLRRsyH’
‘~/tmp/scratch/RtmpMHDeMf’ ‘~/tmp/scratch/RtmpMK8uhJ’
‘~/tmp/scratch/RtmpMtJLmZ’ ‘~/tmp/scratch/RtmpNBeA6d’
‘~/tmp/scratch/RtmpNFJk5c’ ‘~/tmp/scratch/RtmpNO0wOa’
‘~/tmp/scratch/RtmpNSFWvV’ ‘~/tmp/scratch/RtmpNTIAIO’
‘~/tmp/scratch/RtmpNaR9LP’ ‘~/tmp/scratch/RtmpNniWv9’
‘~/tmp/scratch/RtmpNuZWya’ ‘~/tmp/scratch/RtmpO6Hb2d’
‘~/tmp/scratch/RtmpOKIhvD’ ‘~/tmp/scratch/RtmpOeVz0f’
‘~/tmp/scratch/RtmpOjgaOZ’ ‘~/tmp/scratch/RtmpOmSjT0’
‘~/tmp/scratch/RtmpP3wTFl’ ‘~/tmp/scratch/RtmpPpRFpV’
‘~/tmp/scratch/RtmpQ3QB0e’ ‘~/tmp/scratch/RtmpQXZ7Yu’
‘~/tmp/scratch/RtmpQZ0og3’ ‘~/tmp/scratch/RtmpQyyjRc’
‘~/tmp/scratch/RtmpR7vF5S’ ‘~/tmp/scratch/RtmpSC52qn’
‘~/tmp/scratch/RtmpStptRH’ ‘~/tmp/scratch/RtmpU5GyfB’
‘~/tmp/scratch/RtmpU9WP8P’ ‘~/tmp/scratch/RtmpUeVpQK’
‘~/tmp/scratch/RtmpUl86hd’ ‘~/tmp/scratch/RtmpUplOvd’
‘~/tmp/scratch/RtmpV1lHpS’ ‘~/tmp/scratch/RtmpVPfyKc’
‘~/tmp/scratch/RtmpVTs8p4’ ‘~/tmp/scratch/RtmpWdLPNV’
‘~/tmp/scratch/RtmpWjFWqz’ ‘~/tmp/scratch/RtmpWuUbjG’
‘~/tmp/scratch/RtmpX94kAv’ ‘~/tmp/scratch/RtmpXSCw6E’
‘~/tmp/scratch/RtmpZLp8yY’ ‘~/tmp/scratch/RtmpZhmj3E’
‘~/tmp/scratch/Rtmpa3kv7R’ ‘~/tmp/scratch/RtmpaFexTJ’
‘~/tmp/scratch/RtmpaIyo4G’ ‘~/tmp/scratch/RtmpaaGQgX’
‘~/tmp/scratch/RtmpbyjruH’ ‘~/tmp/scratch/Rtmpcbz7Yj’
‘~/tmp/scratch/RtmpdJfDbR’ ‘~/tmp/scratch/RtmpdOf0NP’
‘~/tmp/scratch/RtmpdnVLLf’ ‘~/tmp/scratch/RtmpduilAZ’
‘~/tmp/scratch/RtmpdzlNMV’ ‘~/tmp/scratch/RtmpeBiASH’
‘~/tmp/scratch/RtmpeBmBYR’ ‘~/tmp/scratch/RtmpfL0izH’
‘~/tmp/scratch/RtmpfMfKoA’ ‘~/tmp/scratch/RtmpfWUXWL’
‘~/tmp/scratch/RtmpfyhTZZ’ ‘~/tmp/scratch/Rtmpg8zaaW’
‘~/tmp/scratch/RtmpgYromf’ ‘~/tmp/scratch/RtmphOMEZb’
‘~/tmp/scratch/RtmphsSY1B’ ‘~/tmp/scratch/RtmpiMmLdK’
‘~/tmp/scratch/RtmpiQDYaO’ ‘~/tmp/scratch/RtmpiW0X5p’
‘~/tmp/scratch/Rtmpih0fjT’ ‘~/tmp/scratch/RtmpirZVIO’
‘~/tmp/scratch/Rtmpiy25gw’ ‘~/tmp/scratch/RtmpjPfCV1’
‘~/tmp/scratch/RtmpjPsx2M’ ‘~/tmp/scratch/Rtmpjb10el’
‘~/tmp/scratch/RtmpjjNhHc’ ‘~/tmp/scratch/RtmpkGW77x’
‘~/tmp/scratch/RtmpkGtA5o’ ‘~/tmp/scratch/RtmplnHSt8’
‘~/tmp/scratch/RtmplzHRxj’ ‘~/tmp/scratch/RtmpnVv8fq’
‘~/tmp/scratch/RtmpnWvrc2’ ‘~/tmp/scratch/RtmpnoBbpq’
‘~/tmp/scratch/Rtmpo7egRx’ ‘~/tmp/scratch/RtmpoZq0cU’
‘~/tmp/scratch/RtmppY7sdH’ ‘~/tmp/scratch/Rtmppldgaa’
‘~/tmp/scratch/RtmpqL6ZiH’ ‘~/tmp/scratch/RtmpqUnayE’
‘~/tmp/scratch/RtmpqVk3Lr’ ‘~/tmp/scratch/RtmpqxHYch’
‘~/tmp/scratch/Rtmpr1dA87’ ‘~/tmp/scratch/RtmprNcBEs’
‘~/tmp/scratch/RtmprQdY4x’ ‘~/tmp/scratch/RtmprRiRuo’
‘~/tmp/scratch/RtmptQwxyS’ ‘~/tmp/scratch/RtmptoY3sY’
‘~/tmp/scratch/RtmpunVyEd’ ‘~/tmp/scratch/Rtmpvd4MJg’
‘~/tmp/scratch/Rtmpvnpd0D’ ‘~/tmp/scratch/Rtmpw1xOLu’
‘~/tmp/scratch/RtmpwBQv9F’ ‘~/tmp/scratch/RtmpwgxnxM’
‘~/tmp/scratch/RtmpxpGzYV’ ‘~/tmp/scratch/RtmpyEaam3’
‘~/tmp/scratch/RtmpyRu2MI’ ‘~/tmp/scratch/Rtmpycsvmd’
‘~/tmp/scratch/RtmpzWngZW’ ‘~/tmp/scratch/RtmpzZACSD’
‘~/tmp/scratch/RtmpzbLehU’ ‘~/tmp/scratch/ccSvWrDw.s’
‘~/tmp/scratch/xvfb-run.07NUDB’ ‘~/tmp/scratch/xvfb-run.082dwe’
‘~/tmp/scratch/xvfb-run.0FbIyO’ ‘~/tmp/scratch/xvfb-run.0jK85C’
‘~/tmp/scratch/xvfb-run.4XIFqd’ ‘~/tmp/scratch/xvfb-run.4cVaRI’
‘~/tmp/scratch/xvfb-run.67bbHX’ ‘~/tmp/scratch/xvfb-run.6kbqfs’
‘~/tmp/scratch/xvfb-run.7F0aXb’ ‘~/tmp/scratch/xvfb-run.7PmMlr’
‘~/tmp/scratch/xvfb-run.7YjnbK’ ‘~/tmp/scratch/xvfb-run.7umORB’
‘~/tmp/scratch/xvfb-run.7vLsmI’ ‘~/tmp/scratch/xvfb-run.807RfW’
‘~/tmp/scratch/xvfb-run.8fbdf0’ ‘~/tmp/scratch/xvfb-run.8uxumO’
‘~/tmp/scratch/xvfb-run.An70zP’ ‘~/tmp/scratch/xvfb-run.CIfibH’
‘~/tmp/scratch/xvfb-run.CjdR9K’ ‘~/tmp/scratch/xvfb-run.EOCrjd’
‘~/tmp/scratch/xvfb-run.EnXxmT’ ‘~/tmp/scratch/xvfb-run.F3X05W’
‘~/tmp/scratch/xvfb-run.FFQbtj’ ‘~/tmp/scratch/xvfb-run.FPe5HJ’
‘~/tmp/scratch/xvfb-run.FSOd1Z’ ‘~/tmp/scratch/xvfb-run.GuBA60’
‘~/tmp/scratch/xvfb-run.IiqWrK’ ‘~/tmp/scratch/xvfb-run.J40YRQ’
‘~/tmp/scratch/xvfb-run.MZXXYs’ ‘~/tmp/scratch/xvfb-run.OhbIVI’
‘~/tmp/scratch/xvfb-run.Ortn8A’ ‘~/tmp/scratch/xvfb-run.TRh1xf’
‘~/tmp/scratch/xvfb-run.UVfpVf’ ‘~/tmp/scratch/xvfb-run.Ugf62n’
‘~/tmp/scratch/xvfb-run.V8t5Ut’ ‘~/tmp/scratch/xvfb-run.W45Dwy’
‘~/tmp/scratch/xvfb-run.WjsxjQ’ ‘~/tmp/scratch/xvfb-run.WlP1BR’
‘~/tmp/scratch/xvfb-run.ZhjMr6’ ‘~/tmp/scratch/xvfb-run.ctOc9p’
‘~/tmp/scratch/xvfb-run.emb33R’ ‘~/tmp/scratch/xvfb-run.f5ItsO’
‘~/tmp/scratch/xvfb-run.fIIPRF’ ‘~/tmp/scratch/xvfb-run.g0jEff’
‘~/tmp/scratch/xvfb-run.gH5c0Z’ ‘~/tmp/scratch/xvfb-run.gUJgOU’
‘~/tmp/scratch/xvfb-run.hUzt35’ ‘~/tmp/scratch/xvfb-run.j2DWUT’
‘~/tmp/scratch/xvfb-run.jBWqVf’ ‘~/tmp/scratch/xvfb-run.kA7Lrv’
‘~/tmp/scratch/xvfb-run.kOocKK’ ‘~/tmp/scratch/xvfb-run.kyLS4P’
‘~/tmp/scratch/xvfb-run.m40CGf’ ‘~/tmp/scratch/xvfb-run.mBHCz8’
‘~/tmp/scratch/xvfb-run.mmzYOr’ ‘~/tmp/scratch/xvfb-run.nB989q’
‘~/tmp/scratch/xvfb-run.nCijUM’ ‘~/tmp/scratch/xvfb-run.nFweFt’
‘~/tmp/scratch/xvfb-run.nHsqSr’ ‘~/tmp/scratch/xvfb-run.naHm1f’
‘~/tmp/scratch/xvfb-run.nxPCCZ’ ‘~/tmp/scratch/xvfb-run.nzNVuE’
‘~/tmp/scratch/xvfb-run.rBjf2M’ ‘~/tmp/scratch/xvfb-run.rGKNsF’
‘~/tmp/scratch/xvfb-run.rcQQTp’ ‘~/tmp/scratch/xvfb-run.szuJvT’
‘~/tmp/scratch/xvfb-run.tMw4R4’ ‘~/tmp/scratch/xvfb-run.tSY1s4’
‘~/tmp/scratch/xvfb-run.uNJirI’ ‘~/tmp/scratch/xvfb-run.upCOJb’
‘~/tmp/scratch/xvfb-run.vlyDli’ ‘~/tmp/scratch/xvfb-run.vyrpRP’
‘~/tmp/scratch/xvfb-run.yVXwe5’ ‘~/tmp/scratch/xvfb-run.ynDncF’
‘~/tmp/scratch/xvfb-run.z2oOrH’ ‘~/tmp/scratch/xvfb-run.z3MeMf’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rPDBapi-structural-bioinformatics.Rmd’ using rmarkdown
Quitting from rPDBapi-structural-bioinformatics.Rmd:1175-1197 [query-search-variants]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
---
Backtrace:
▆
1. └─rPDBapi::query_search(search_term = "X-RAY DIFFRACTION", query_type = "ExpTypeQuery")
2. └─rPDBapi:::rpdbapi_abort(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rPDBapi-structural-bioinformatics.Rmd' failed with diagnostics:
All retrieval attempts failed after 1 tries. Please check the search term, query type, and your network connection.
--- failed re-building ‘rPDBapi-structural-bioinformatics.Rmd’
SUMMARY: processing the following file failed:
‘rPDBapi-structural-bioinformatics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64