Last updated on 2026-06-08 17:49:13 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 7.4-0 | 6.50 | 132.99 | 139.49 | OK | |
| r-devel-linux-x86_64-debian-gcc | 7.4-0 | 4.40 | 88.02 | 92.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 7.4-0 | 11.00 | 193.08 | 204.08 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 7.4-0 | 11.00 | 203.64 | 214.64 | OK | |
| r-devel-windows-x86_64 | 7.4-0 | 8.00 | 144.00 | 152.00 | OK | |
| r-patched-linux-x86_64 | 7.4-0 | 6.18 | 127.52 | 133.70 | OK | |
| r-release-linux-x86_64 | 7.4-0 | 5.01 | 124.99 | 130.00 | OK | |
| r-release-macos-arm64 | 7.4-0 | 2.00 | 36.00 | 38.00 | OK | |
| r-release-macos-x86_64 | 7.4-0 | 5.00 | 140.00 | 145.00 | OK | |
| r-release-windows-x86_64 | 7.4-0 | 8.00 | 147.00 | 155.00 | OK | |
| r-oldrel-macos-arm64 | 7.4-0 | 2.00 | 42.00 | 44.00 | OK | |
| r-oldrel-macos-x86_64 | 7.4-0 | 5.00 | 163.00 | 168.00 | OK | |
| r-oldrel-windows-x86_64 | 7.4-0 | 10.00 | 183.00 | 193.00 | OK |
Version: 7.4-0
Check: examples
Result: ERROR
Running examples in ‘mfdb-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mfdb_dplyr
> ### Title: MareFrame DB dplyr interface
> ### Aliases: mfdb_dplyr_table mfdb_dplyr_survey_index mfdb_dplyr_division
> ### mfdb_dplyr_sample mfdb_dplyr_predator mfdb_dplyr_prey
>
> ### ** Examples
>
> mdb <- mfdb(tempfile(fileext = '.duckdb'))
2026-06-07 15:21:25.391498 INFO:mfdb:Creating schema from scratch
2026-06-07 15:21:26.238372 INFO:mfdb:Taxonomy market_category no updates to make
2026-06-07 15:21:27.225065 INFO:mfdb:Schema up-to-date
>
> # Include as many columns as possible
> mfdb_dplyr_sample(mdb)
Error in check_dbplyr() :
The package "dbplyr" is required to communicate with database backends.
Calls: mfdb_dplyr_sample ... tbl.DBIConnection -> check_dbplyr -> check_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mfdb_bulk 4.036 0.206 5.835
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 7.4-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘import_hydrography_cmems.Rmd’ using rmarkdown
ok - extract mean bottom temperature by quarter and area
--- finished re-building ‘import_hydrography_cmems.Rmd’
1..1
# Looks like you passed all 1 tests.
--- re-building ‘population.Rmd’ using rmarkdown
ok - Group/filter by populations
--- finished re-building ‘population.Rmd’
1..1
# Looks like you passed all 1 tests.
--- re-building ‘tow_data.Rmd’ using rmarkdown
ok - Grouping / filtering by tow_depth
ok - Unaggregated tow data
ok - Using scale_index = 'tow_length'
ok - scale = 'tow_length', grouping by tow_depth
ok - Group by tow_bait_type
ok - Unaggregated tow_net_type
--- finished re-building ‘tow_data.Rmd’
1..6
# Looks like you passed all 6 tests.
--- re-building ‘trip.Rmd’ using rmarkdown
ok - trip_start_date = '2019-01-21'
ok - trip_start_port = mfdb_group(...)
Quitting from trip.Rmd:197-202 [unnamed-chunk-13]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_package_not_found>
Error in `check_dbplyr()`:
! The package "dbplyr" is required to communicate with database
backends.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'trip.Rmd' failed with diagnostics:
The package "dbplyr" is required to communicate with database backends.
--- failed re-building ‘trip.Rmd’
1..2
# Looks like you passed all 2 tests.
--- re-building ‘weightmeasurements.Rmd’ using rmarkdown
ok - measurements = c('overall', 'liver', 'gonad', 'stomach')
ok - measurements = c('stomach')
ok - measurements = c('liver', 'stomach')
ok - measurements = c('overall', 'gonad')
--- finished re-building ‘weightmeasurements.Rmd’
1..4
# Looks like you passed all 4 tests.
SUMMARY: processing the following file failed:
‘trip.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc