Last updated on 2026-07-04 23:54:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.10.0 | 5.83 | 140.59 | 146.42 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.10.0 | 4.35 | 99.41 | 103.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.10.0 | 11.00 | 391.49 | 402.49 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.10.0 | 11.00 | 412.29 | 423.29 | OK | |
| r-devel-windows-x86_64 | 2.10.0 | 9.00 | 166.00 | 175.00 | OK | |
| r-patched-linux-x86_64 | 2.10.0 | 8.08 | 134.21 | 142.29 | OK | |
| r-release-linux-x86_64 | 2.10.0 | OK | ||||
| r-release-macos-arm64 | 2.10.0 | 2.00 | 33.00 | 35.00 | OK | |
| r-release-macos-x86_64 | 2.10.0 | 5.00 | 165.00 | 170.00 | OK | |
| r-release-windows-x86_64 | 2.10.0 | 10.00 | 149.00 | 159.00 | OK | |
| r-oldrel-macos-arm64 | 2.10.0 | 2.00 | 38.00 | 40.00 | ERROR | |
| r-oldrel-macos-x86_64 | 2.10.0 | 5.00 | 133.00 | 138.00 | OK | |
| r-oldrel-windows-x86_64 | 2.10.0 | 13.00 | 177.00 | 190.00 | OK |
Version: 2.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(loo)
This is loo version 2.10.0
- Online documentation and vignettes at mc-stan.org/loo
- As of v2.0.0 loo defaults to 1 core but we recommend using as many as possible. Use the 'cores' argument or set options(mc.cores = NUM_CORES) for an entire session.
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:loo':
compare
> Sys.setenv("R_TESTS" = "")
> test_check("loo")
Starting 2 test processes.
> test_loo_and_waic.R:
> test_loo_and_waic.R: *** caught segfault ***
> test_loo_and_waic.R: address 0x110, cause 'invalid permissions'
> test_loo_and_waic.R:
> test_loo_and_waic.R: *** caught segfault ***
> test_loo_and_waic.R: address 0x110, cause 'invalid permissions'
> test_loo_and_waic.R:
> test_loo_and_waic.R: Traceback:
> test_loo_and_waic.R: 1: outer(X, Y)
> test_loo_and_waic.R: 2: -theta %o% x
> test_loo_and_waic.R: 3: posterior::gpdfit(exp(x) - exp_cutoff, sort_x = FALSE)
> test_loo_and_waic.R: 4: psis_smooth_tail(lw_tail, cutoff)
> test_loo_and_waic.R: 5: is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i])
> test_loo_and_waic.R: 6: FUN(X[[i]], ...)
> test_loo_and_waic.R: 7: lapply(X = S, FUN = FUN, ...)
> test_loo_and_waic.R: 8: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_and_waic.R: 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_and_waic.R: 10: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
> test_loo_and_waic.R: 12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
> test_loo_and_waic.R: 13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
> test_loo_and_waic.R: 14: FUN(X[[i]], ...)
> test_loo_and_waic.R: 15: lapply(seq_len(cores), inner.do)
> test_loo_and_waic.R: 16: parallel::mclapply(X = seq_len(N), mc.cores = cores, FUN = function(i) is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i]))
> test_loo_and_waic.R: 17: do_importance_sampling(log_ratios, r_eff = r_eff, cores = cores, method = method)
> test_loo_and_waic.R: 18: importance_sampling.array(log_ratios = -x, r_eff = r_eff, cores = cores, method = is_method)
> test_loo_and_waic.R: 19: loo.array(LLarr, r_eff = r_eff_arr, cores = 2)
> test_loo_and_waic.R: 20: loo(LLarr, r_eff = r_eff_arr, cores = 2)
> test_loo_and_waic.R: 21: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning"))
> test_loo_and_waic.R: 22: suppressWarnings(loo(LLarr, r_eff = r_eff_arr, cores = 2))
> test_loo_and_waic.R: 23: eval(code, test_env)
> test_loo_and_waic.R: 24: eval(code, test_env)
> test_loo_and_waic.R: 25: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
> test_loo_and_waic.R: 26: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_and_waic.R: 27: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_and_waic.R: 28: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 29: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
> test_loo_and_waic.R: 30: doWithOneRestart(return(expr), restart)
> test_loo_and_waic.R: 31: withOneRestart(expr, restarts[[1L]])
> test_loo_and_waic.R: 32: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
> test_loo_and_waic.R: 33: test_code(code, parent.frame())
> test_loo_and_waic.R: 34: test_that("loo with cores=1 and cores=2 gives same results", { loo2 <- suppressWarnings(loo(LLarr, r_eff = r_eff_arr, cores = 2)) expect_equal(loo1$estimates, loo2$estimates) })
> test_loo_and_waic.R: 35: eval(code, test_env)
> test_loo_and_waic.R: 36: eval(code, test_env)
> test_loo_and_waic.R: 37: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
> test_loo_and_waic.R: 38: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_and_waic.R: 39: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_and_waic.R: 40: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 41: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
> test_loo_and_waic.R: 42: doWithOneRestart(return(expr), restart)
> test_loo_and_waic.R: 43: withOneRestart(expr, restarts[[1L]])
> test_loo_and_waic.R: 44: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
> test_loo_and_waic.R: 45: test_code(code = exprs, env = env, reporter = get_reporter() %||%
> test_loo_and_waic.R: Traceback:
> test_loo_and_waic.R: 1: outer(X, Y)
> test_loo_and_waic.R:
> test_loo_and_waic.R: 2: -theta %o% x
> test_loo_and_waic.R: StopReporter$new())
> test_loo_and_waic.R: 46: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
> test_loo_and_waic.R: 47: test_one_file(path, env = the$testing_env, shuffle = shuffle) 3: posterior::gpdfit(exp(x) - exp_cutoff, sort_x = FALSE)
> test_loo_and_waic.R: 4: psis_smooth_tail(lw_tail, cutoff)
> test_loo_and_waic.R:
> test_loo_and_waic.R: 48: 5: doTryCatch(return(expr), name, parentenv, handler)is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i])
> test_loo_and_waic.R: 6: FUN(X[[i]], ...)
> test_loo_and_waic.R: 7: lapply(X = S, FUN = FUN, ...)
> test_loo_and_waic.R: 8:
> test_loo_and_waic.R: doTryCatch(return(expr), name, parentenv, handler)49:
> test_loo_and_waic.R: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 9:
> test_loo_and_waic.R: tryCatchOne(expr, names, parentenv, handlers[[1L]])50:
> test_loo_and_waic.R: 10: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L NULL sm <- strsplit(conditionMessage(e), "\n")[[1L]]})
> test_loo_and_waic.R: 52: with_reporter(multi, test_one_file(path, env = the$testing_env, shuffle = shuffle)) w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
> test_loo_and_waic.R: if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ")53: }asNamespace("testthat")$queue_task(path, shuffle) else prefix <- "Error : "
> test_loo_and_waic.R: msg <- paste0(prefix, conditionMessage(e), "\n")54: .Internal(seterrmessage(msg[1L]))(function (path, shuffle) if (!silent && isTRUE(getOption("show.error.messages"))) {{ cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
> test_loo_and_waic.R: 12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
> test_loo_and_waic.R: asNamespace("testthat")$queue_task(path, shuffle)13: })(base::quote("test_loo_and_waic.R"), base::quote(FALSE))
> test_loo_and_waic.R: 55: (function (what, args, quote = FALSE, envir = parent.frame()) { if (!is.list(args)) stop("second argument must be a list") if (quote) args <- lapply(args, enquote)sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
> test_loo_and_waic.R: 14: FUN(X[[i]], ...)
> test_loo_and_waic.R: .Internal(do.call(what, args, envir))15: })(base::quote(function (path, shuffle) lapply(seq_len(cores), inner.do){
> test_loo_and_waic.R: asNamespace("testthat")$queue_task(path, shuffle)16: }), base::quote(list("test_loo_and_waic.R", FALSE)), envir = base::quote(<environment>), quote = base::quote(TRUE))
> test_loo_and_waic.R: 56: base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE)
> test_loo_and_waic.R: parallel::mclapply(X = seq_len(N), mc.cores = cores, FUN = function(i) is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i]))
> test_loo_and_waic.R: 57: base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", compress = FALSE)
> test_loo_and_waic.R: 58: base::withCallingHandlers({17: {do_importance_sampling(log_ratios, r_eff = r_eff, cores = cores, NULL method = method) NULL
> test_loo_and_waic.R: }18: base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), importance_sampling.array(log_ratios = -x, r_eff = r_eff, cores = cores, base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, method = is_method) quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55",
> test_loo_and_waic.R: compress = FALSE)19: base::flush(base::stdout())loo.array(LLarr, r_eff = r_eff_arr, cores = 2) base::flush(base::stderr())
> test_loo_and_waic.R: {20: NULLloo(LLarr, r_eff = r_eff_arr, cores = 2) NULL
> test_loo_and_waic.R: }21: base::invisible()withCallingHandlers(expr, warning = function(w) if (inherits(w, }, error = function(e) { classes)) tryInvokeRestart("muffleWarning")) {
> test_loo_and_waic.R: callr_data <- base::as.environment("tools:callr")$`__callr_data__`22: err <- callr_data$errsuppressWarnings(loo(LLarr, r_eff = r_eff_arr, cores = 2)) if (FALSE) {
> test_loo_and_waic.R: base::assign(".Traceback", base::.traceback(4), envir = callr_data)23: utils::dump.frames("__callr_dump__")eval(code, test_env) base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`,
> test_loo_and_waic.R: envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e)24: eval(code, test_env)
> test_loo_and_waic.R: 25: withCallingHandlers({ e2 <- err$new_error("error in callr subprocess") eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations class <- base::class if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() class(e2) <- base::c("callr_remote_error", class(e2)) } e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, interrupt = function(e) { {}, expectation = handle_expectation, packageNotFoundError = function(e) { callr_data <- base::as.environment("tools:callr")$`__callr_data__` if (on_cran()) { err <- callr_data$err skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot") if (FALSE) {}, skip = handle_skip, warning = handle_warning, message = handle_message, base::assign(".Traceback", base::.traceback(4), envir = callr_data) error = handle_error, interrupt = handle_interrupt) utils::dump.frames("__callr_dump__")
> test_loo_and_waic.R: base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, 26: envir = callr_data)doTryCatch(return(expr), name, parentenv, handler) base::rm("__callr_dump__", envir = .GlobalEnv)
> test_loo_and_waic.R: }27: e <- err$process_call(e)tryCatchOne(expr, names, parentenv, handlers[[1L]]) e2 <- err$new_error("error in callr subprocess")
> test_loo_and_waic.R: class <- base::class28: class(e2) <- base::c("callr_remote_error", class(e2))tryCatchList(expr, classes, parentenv, handlers) e2 <- err$add_trace_back(e2)
> test_loo_and_waic.R: cut <- base::which(e2$trace$scope == "global")[1]29: if (!base::is.na(cut)) {tryCatch(withCallingHandlers({ e2$trace <- e2$trace[-(1:cut), ] eval(code, test_env) } new_expectations <- the$test_expectations > starting_expectations if (callr_data$has_otel) { if (snapshot_skipped) { callr_data$otel_span$record_exception(e2) skip("On CRAN") } } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, callr_message = function(e) { base::try({ else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { callr_data <- base::as.environment("tools:callr")$`__callr_data__` skip(paste0("{", e$package, "} is not installed.")) pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, } NULL)))}, snapshot_on_cran = function(cnd) { data <- base::paste0(e$code, " ", base::nchar(msg), "\n", snapshot_skipped <<- TRUE msg)
> test_loo_and_waic.R: invokeRestart("muffle_cran_snapshot") if (callr_data$has_otel) {}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
> test_loo_and_waic.R: callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data) if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) {30: base::invokeRestart("cli_message_handled")doWithOneRestart(return(expr), restart)
> test_loo_and_waic.R: 31: withOneRestart(expr, restarts[[1L]])
> test_loo_and_waic.R: 32: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage") } })})
> test_loo_and_waic.R: 59: if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty()doTryCatch(return(expr), name, parentenv, handler) }
> test_loo_and_waic.R: }, expectation = handle_expectation, packageNotFoundError = function(e) {60: if (on_cran()) {tryCatchOne(expr, names, parentenv, handlers[[1L]]) skip(paste0("{", e$package, "} is not installed."))
> test_loo_and_waic.R: }61: }, snapshot_on_cran = function(cnd) {tryCatchList(expr, names[-nh], parentenv, handlers[-nh]) snapshot_skipped <<- TRUE
> test_loo_and_waic.R: invokeRestart("muffle_cran_snapshot")62: }, skip = handle_skip, warning = handle_warning, message = handle_message, doTryCatch(return(expr), name, parentenv, handler) error = handle_error, interrupt = handle_interrupt), error = handle_fatal),
> test_loo_and_waic.R: end_test = function() {63: })tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
> test_loo_and_waic.R: names[nh], parentenv, handlers[[nh]])33:
> test_loo_and_waic.R: test_code(code, parent.frame())64:
> test_loo_and_waic.R: tryCatchList(expr, classes, parentenv, handlers)34:
> test_loo_and_waic.R: test_that("loo with cores=1 and cores=2 gives same results", { loo2 <- suppressWarnings(loo(LLarr, r_eff = r_eff_arr, cores = 2)) expect_equal(loo1$estimates, loo2$estimates)65: })base::tryCatch(base::withCallingHandlers({
> test_loo_and_waic.R: {35: NULLeval(code, test_env) NULL } base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"),
> test_loo_and_waic.R: base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, 36: quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) {eval(code, test_env) NULL
> test_loo_and_waic.R: NULL37: }withCallingHandlers({ base::invisible() eval(code, test_env)}, error = function(e) { new_expectations <- the$test_expectations > starting_expectations { if (snapshot_skipped) { callr_data <- base::as.environment("tools:callr")$`__callr_data__` skip("On CRAN") err <- callr_data$err } if (FALSE) { else if (!new_expectations && skip_on_empty) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) skip_empty() utils::dump.frames("__callr_dump__") } base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, }, expectation = handle_expectation, packageNotFoundError = function(e) { envir = callr_data) if (on_cran()) { base::rm("__callr_dump__", envir = .GlobalEnv) skip(paste0("{", e$package, "} is not installed.")) } } e <- err$process_call(e)}, snapshot_on_cran = function(cnd) { e2 <- err$new_error("error in callr subprocess") snapshot_skipped <<- TRUE class <- base::class invokeRestart("muffle_cran_snapshot") class(e2) <- base::c("callr_remote_error", class(e2))}, skip = handle_skip, warning = handle_warning, message = handle_message, e2 <- err$add_trace_back(e2) error = handle_error, interrupt = handle_interrupt) cut <- base::which(e2$trace$scope == "global")[1]
> test_loo_and_waic.R: if (!base::is.na(cut)) {38: e2$trace <- e2$trace[-(1:cut), ]doTryCatch(return(expr), name, parentenv, handler) }
> test_loo_and_waic.R: if (callr_data$has_otel) {39: callr_data$otel_span$record_exception(e2)tryCatchOne(expr, names, parentenv, handlers[[1L]]) }
> test_loo_and_waic.R: base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, interrupt = function(e) { {40: callr_data <- base::as.environment("tools:callr")$`__callr_data__`tryCatchList(expr, classes, parentenv, handlers) err <- callr_data$err
> test_loo_and_waic.R: if (FALSE) {41: base::assign(".Traceback", base::.traceback(4), envir = callr_data)tryCatch(withCallingHandlers({ utils::dump.frames("__callr_dump__") eval(code, test_env) base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, new_expectations <- the$test_expectations > starting_expectations envir = callr_data) if (snapshot_skipped) { base::rm("__callr_dump__", envir = .GlobalEnv) skip("On CRAN") } } e <- err$process_call(e) else if (!new_expectations && skip_on_empty) { e2 <- err$new_error("error in callr subprocess") skip_empty() class <- base::class } class(e2) <- base::c("callr_remote_error", class(e2))}, expectation = handle_expectation, packageNotFoundError = function(e) { e2 <- err$add_trace_back(e2) if (on_cran()) { cut <- base::which(e2$trace$scope == "global")[1] skip(paste0("{", e$package, "} is not installed.")) if (!base::is.na(cut)) { } e2$trace <- e2$trace[-(1:cut), ]}, snapshot_on_cran = function(cnd) { } snapshot_skipped <<- TRUE if (callr_data$has_otel) { invokeRestart("muffle_cran_snapshot") callr_data$otel_span$record_exception(e2)}, skip = handle_skip, warning = handle_warning, message = handle_message, } error = handle_error, interrupt = handle_interrupt), error = handle_fatal) base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) {
> test_loo_and_waic.R: 42: doWithOneRestart(return(expr), restart)
> test_loo_and_waic.R: 43: e$code <- "301"withOneRestart(expr, restarts[[1L]]) } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", msg)
> test_loo_and_waic.R: if (callr_data$has_otel) {44: callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code))withRestarts(tryCatch(withCallingHandlers({ } eval(code, test_env) pxlib$write_fd(3L, data) new_expectations <- the$test_expectations > starting_expectations if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { if (snapshot_skipped) { base::invokeRestart("muffleMessage") skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() } } })}), error = function(e) { { NULL}, expectation = handle_expectation, packageNotFoundError = function(e) { NULL if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE } invokeRestart("muffle_cran_snapshot") if (FALSE) { base::try(base::stop(e)) } if (FALSE) { base::q(save = "no", status = 1)}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal),
> test_loo_and_waic.R: end_test = function() { } })
> test_loo_and_waic.R: 45: base::invisible()test_code(code = exprs, env = env, reporter = get_reporter() %||% }, interrupt = function(e) { StopReporter$new()) {
> test_loo_and_waic.R: NULL46: NULLsource_file(path, env = env(env), desc = desc, shuffle = shuffle, } error_call = error_call) if (FALSE) {
> test_loo_and_waic.R: base::q(save = "no", status = 1)47: }test_one_file(path, env = the$testing_env, shuffle = shuffle) base::invisible()
> test_loo_and_waic.R: })48:
> test_loo_and_waic.R: doTryCatch(return(expr), name, parentenv, handler)An irrecoverable exception occurred. R is aborting now ...
> test_loo_and_waic.R:
> test_loo_and_waic.R: 49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_and_waic.R: 50: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
> test_loo_and_waic.R: 52: with_reporter(multi, test_one_file(path, env = the$testing_env, shuffle = shuffle))
> test_loo_and_waic.R: 53: asNamespace("testthat")$queue_task(path, shuffle)
> test_loo_and_waic.R: 54: (function (path, shuffle) { asNamespace("testthat")$queue_task(path, shuffle)})(base::quote("test_loo_and_waic.R"), base::quote(FALSE))
> test_loo_and_waic.R: 55: (function (what, args, quote = FALSE, envir = parent.frame()) { if (!is.list(args)) stop("second argument must be a list") if (quote) args <- lapply(args, enquote) .Internal(do.call(what, args, envir))})(base::quote(function (path, shuffle) { asNamespace("testthat")$queue_task(path, shuffle)}), base::quote(list("test_loo_and_waic.R", FALSE)), envir = base::quote(<environment>), quote = base::quote(TRUE))
> test_loo_and_waic.R: 56: base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE)
> test_loo_and_waic.R: 57: base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", compress = FALSE)
> test_loo_and_waic.R: 58: base::withCallingHandlers({ { NULL NULL } base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) { NULL NULL } base::invisible()}, error = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, interrupt = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", msg) if (callr_data$has_otel) { callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data) if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage") } })})
> test_loo_and_waic.R: 59: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_and_waic.R: 60: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_and_waic.R: 61: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
> test_loo_and_waic.R: 62: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_and_waic.R: 63: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
> test_loo_and_waic.R: 64: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_and_waic.R: 65: base::tryCatch(base::withCallingHandlers({ { NULL NULL } base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba2c9047f6"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) { NULL NULL } base::invisible()}, error = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, interrupt = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2))
> test_loo_and_waic.R: e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba34647e55", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", msg) if (callr_data$has_otel) { callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data) if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage") } })}), error = function(e) { { NULL NULL } if (FALSE) { base::try(base::stop(e)) } if (FALSE) { base::q(save = "no", status = 1) } base::invisible()}, interrupt = function(e) { { NULL NULL } if (FALSE) { base::q(save = "no", status = 1) } base::invisible()})
> test_loo_and_waic.R: An irrecoverable exception occurred. R is aborting now ...
Saving _problems/test_loo_and_waic-30.R
> test_loo_predictive_metric.R:
> test_loo_predictive_metric.R: *** caught segfault ***
> test_loo_predictive_metric.R: address 0x110, cause 'invalid permissions'
> test_loo_predictive_metric.R:
> test_loo_predictive_metric.R: *** caught segfault ***
> test_loo_predictive_metric.R: address 0x110, cause 'invalid permissions'
> test_loo_predictive_metric.R:
> test_loo_predictive_metric.R: Traceback:
> test_loo_predictive_metric.R: 1: outer(X, Y)
> test_loo_predictive_metric.R: 2: -theta %o% x
> test_loo_predictive_metric.R: 3: posterior::gpdfit(exp(x) - exp_cutoff, sort_x = FALSE)
> test_loo_predictive_metric.R: 4: psis_smooth_tail(lw_tail, cutoff)
> test_loo_predictive_metric.R: 5: is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i])
> test_loo_predictive_metric.R: 6: FUN(X[[i]], ...)
> test_loo_predictive_metric.R: 7: lapply(X = S, FUN = FUN, ...)
> test_loo_predictive_metric.R: 8: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_predictive_metric.R: 10: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_predictive_metric.R: 11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
> test_loo_predictive_metric.R: 12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
> test_loo_predictive_metric.R: 13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
> test_loo_predictive_metric.R: 14: FUN(X[[i]], ...)
> test_loo_predictive_metric.R: 15: lapply(seq_len(cores), inner.do)
> test_loo_predictive_metric.R: 16: parallel::mclapply(X = seq_len(N), mc.cores = cores, FUN = function(i) is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i]))
> test_loo_predictive_metric.R: 17: do_importance_sampling(log_ratios, r_eff = r_eff, cores = cores, method = method)
> test_loo_predictive_metric.R: 18: importance_sampling.matrix(log_ratios, ..., r_eff = r_eff, cores = cores, method = "psis")
> test_loo_predictive_metric.R: 19: psis.matrix(-LL, r_eff = r_eff, cores = 2)
> test_loo_predictive_metric.R: 20: psis(-LL, r_eff = r_eff, cores = 2)
> test_loo_predictive_metric.R: 21: eval(code, test_env)
> test_loo_predictive_metric.R: 22: eval(code, test_env)
> test_loo_predictive_metric.R: 23: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
> test_loo_predictive_metric.R: 24: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 25: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_predictive_metric.R: 26: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_predictive_metric.R: 27:
> test_loo_predictive_metric.R: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
> test_loo_predictive_metric.R: 28: doWithOneRestart(return(expr), restart)
> test_loo_predictive_metric.R: 29: withOneRestart(expr, restarts[[1L]])
> test_loo_predictive_metric.R: 30: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
> test_loo_predictive_metric.R: 31: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
> test_loo_predictive_metric.R: 32: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
> test_loo_predictive_metric.R: 33: test_one_file(path, env = the$testing_env, shuffle = shuffle)
> test_loo_predictive_metric.R: 34: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 35: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_predictive_metric.R: 36: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_predictive_metric.R: 37: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
> test_loo_predictive_metric.R: 38: with_reporter(multi, test_one_file(path, env = the$testing_env, shuffle = shuffle))
> test_loo_predictive_metric.R: 39: asNamespace("testthat")$queue_task(path, shuffle)
> test_loo_predictive_metric.R: 40: (function (path, shuffle) { asNamespace("testthat")$queue_task(path, shuffle)})(base::quote("test_loo_predictive_metric.R"), base::quote(FALSE))
> test_loo_predictive_metric.R: 41: (function (what, args, quote = FALSE, envir = parent.frame()) { if (!is.list(args)) stop("second argument must be a list") if (quote) args <- lapply(args, enquote) .Internal(do.call(what, args, envir))})(base::quote(function (path, shuffle)
> test_loo_predictive_metric.R: Traceback:
> test_loo_predictive_metric.R: 1: outer(X, Y)
> test_loo_predictive_metric.R: 2: -theta %o% x
> test_loo_predictive_metric.R: 3: posterior::gpdfit(exp(x) - exp_cutoff, sort_x = FALSE)
> test_loo_predictive_metric.R: { 4: asNamespace("testthat")$queue_task(path, shuffle)psis_smooth_tail(lw_tail, cutoff)}), base::quote(list("test_loo_predictive_metric.R", FALSE)),
> test_loo_predictive_metric.R: envir = base::quote(<environment>), quote = base::quote(TRUE)) 5:
> test_loo_predictive_metric.R: is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i])42:
> test_loo_predictive_metric.R: base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE)
> test_loo_predictive_metric.R: 43: base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), 6: base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, FUN(X[[i]], ...)
> test_loo_predictive_metric.R: 7: lapply(X = S, FUN = FUN, ...)
> test_loo_predictive_metric.R: quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", compress = FALSE)
> test_loo_predictive_metric.R: 44: base::withCallingHandlers({ 8: {doTryCatch(return(expr), name, parentenv, handler) NULL
> test_loo_predictive_metric.R: NULL 9: }tryCatchOne(expr, names, parentenv, handlers[[1L]]) base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"),
> test_loo_predictive_metric.R: base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, 10: quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", tryCatchList(expr, classes, parentenv, handlers) compress = FALSE)
> test_loo_predictive_metric.R: base::flush(base::stdout())11: base::flush(base::stderr())tryCatch(expr, error = function(e) { { call <- conditionCall(e) NULL if (!is.null(call)) { NULL if (identical(call[[1L]], quote(doTryCatch))) } call <- sys.call(-4L) base::invisible() dcall <- deparse(call, nlines = 1L)}, error = function(e) { prefix <- paste("Error in", dcall, ": ") { LONG <- 75L callr_data <- base::as.environment("tools:callr")$`__callr_data__` sm <- strsplit(conditionMessage(e), "\n")[[1L]] err <- callr_data$err w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (FALSE) { if (is.na(w)) base::assign(".Traceback", base::.traceback(4), envir = callr_data) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], utils::dump.frames("__callr_dump__") type = "b") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, if (w > LONG) envir = callr_data) prefix <- paste0(prefix, "\n ") base::rm("__callr_dump__", envir = .GlobalEnv) } } else prefix <- "Error : " e <- err$process_call(e) msg <- paste0(prefix, conditionMessage(e), "\n") e2 <- err$new_error("error in callr subprocess") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
> test_loo_predictive_metric.R: 12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
> test_loo_predictive_metric.R: 13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) class <- base::class
> test_loo_predictive_metric.R: class(e2) <- base::c("callr_remote_error", class(e2))14: e2 <- err$add_trace_back(e2)FUN(X[[i]], ...) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) {
> test_loo_predictive_metric.R: callr_data$otel_span$record_exception(e2)15: }lapply(seq_len(cores), inner.do) base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d",
> test_loo_predictive_metric.R: ".error"))16: }parallel::mclapply(X = seq_len(N), mc.cores = cores, FUN = function(i) is_fun(log_ratios_i = log_ratios[, i], tail_len_i = tail_len[i]))
> test_loo_predictive_metric.R: 17: }, interrupt = function(e) {do_importance_sampling(log_ratios, r_eff = r_eff, cores = cores, { method = method) callr_data <- base::as.environment("tools:callr")$`__callr_data__`
> test_loo_predictive_metric.R: err <- callr_data$err18: if (FALSE) {importance_sampling.matrix(log_ratios, ..., r_eff = r_eff, cores = cores, base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class method = "psis") class(e2) <- base::c("callr_remote_error", class(e2))
> test_loo_predictive_metric.R: 19: psis.matrix(-LL, r_eff = r_eff, cores = 2)
> test_loo_predictive_metric.R: 20: e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] }psis(-LL, r_eff = r_eff, cores = 2) if (callr_data$has_otel) {
> test_loo_predictive_metric.R: 21: eval(code, test_env)
> test_loo_predictive_metric.R: 22: eval(code, test_env)
> test_loo_predictive_metric.R: 23: withCallingHandlers({ eval(code, test_env) callr_data$otel_span$record_exception(e2) new_expectations <- the$test_expectations > starting_expectations } if (snapshot_skipped) { base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` skip("On CRAN") }
> test_loo_predictive_metric.R: pxlib <- callr_data$pxlib if (base::is.null(e$code)) { else if (!new_expectations && skip_on_empty) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { msg) skip(paste0("{", e$package, "} is not installed.")) if (callr_data$has_otel) { } callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code))}, snapshot_on_cran = function(cnd) { } snapshot_skipped <<- TRUE pxlib$write_fd(3L, data) invokeRestart("muffle_cran_snapshot") if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage")}, skip = handle_skip, warning = handle_warning, message = handle_message, } error = handle_error, interrupt = handle_interrupt) })
> test_loo_predictive_metric.R: })24:
> test_loo_predictive_metric.R: doTryCatch(return(expr), name, parentenv, handler)45:
> test_loo_predictive_metric.R: doTryCatch(return(expr), name, parentenv, handler)25:
> test_loo_predictive_metric.R: tryCatchOne(expr, names, parentenv, handlers[[1L]])46:
> test_loo_predictive_metric.R: tryCatchOne(expr, names, parentenv, handlers[[1L]])26:
> test_loo_predictive_metric.R: tryCatchList(expr, classes, parentenv, handlers)47:
> test_loo_predictive_metric.R: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])27:
> test_loo_predictive_metric.R: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN")48: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 49: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), } names[nh], parentenv, handlers[[nh]]) else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) {
> test_loo_predictive_metric.R: 50: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_predictive_metric.R: 51: skip(paste0("{", e$package, "} is not installed."))base::tryCatch(base::withCallingHandlers({ } {}, snapshot_on_cran = function(cnd) { NULL snapshot_skipped <<- TRUE NULL invokeRestart("muffle_cran_snapshot") }}, skip = handle_skip, warning = handle_warning, message = handle_message, base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), error = handle_error, interrupt = handle_interrupt), error = handle_fatal) base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv,
> test_loo_predictive_metric.R: quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr())28: doWithOneRestart(return(expr), restart)
> test_loo_predictive_metric.R: 29: withOneRestart(expr, restarts[[1L]]) {
> test_loo_predictive_metric.R: NULL NULL } base::invisible()}, error = function(e) {30: {withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") } base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot") envir = callr_data)}, skip = handle_skip, warning = handle_warning, message = handle_message, base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
> test_loo_predictive_metric.R: 31: class(e2) <- base::c("callr_remote_error", class(e2))test_code(code = exprs, env = env, reporter = get_reporter() %||% e2 <- err$add_trace_back(e2) StopReporter$new()) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) {
> test_loo_predictive_metric.R: callr_data$otel_span$record_exception(e2)32: }source_file(path, env = env(env), desc = desc, shuffle = shuffle, base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", error_call = error_call) ".error"))
> test_loo_predictive_metric.R: }33: }, interrupt = function(e) {test_one_file(path, env = the$testing_env, shuffle = shuffle) {
> test_loo_predictive_metric.R: callr_data <- base::as.environment("tools:callr")$`__callr_data__`34: err <- callr_data$errdoTryCatch(return(expr), name, parentenv, handler) if (FALSE) {
> test_loo_predictive_metric.R: base::assign(".Traceback", base::.traceback(4), envir = callr_data)35: utils::dump.frames("__callr_dump__")tryCatchOne(expr, names, parentenv, handlers[[1L]]) base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`,
> test_loo_predictive_metric.R: envir = callr_data)36: base::rm("__callr_dump__", envir = .GlobalEnv)tryCatchList(expr, classes, parentenv, handlers) }
> test_loo_predictive_metric.R: e <- err$process_call(e)37: e2 <- err$new_error("error in callr subprocess")tryCatch(code, testthat_abort_reporter = function(cnd) { class <- base::class cat(conditionMessage(cnd), "\n") class(e2) <- base::c("callr_remote_error", class(e2)) NULL e2 <- err$add_trace_back(e2)}) cut <- base::which(e2$trace$scope == "global")[1]
> test_loo_predictive_metric.R: if (!base::is.na(cut)) {38: e2$trace <- e2$trace[-(1:cut), ]with_reporter(multi, test_one_file(path, env = the$testing_env, } shuffle = shuffle)) if (callr_data$has_otel) {
> test_loo_predictive_metric.R: callr_data$otel_span$record_exception(e2)39: }asNamespace("testthat")$queue_task(path, shuffle) base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301"
> test_loo_predictive_metric.R: }40: msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, (function (path, shuffle) NULL))){ asNamespace("testthat")$queue_task(path, shuffle)})(base::quote("test_loo_predictive_metric.R"), base::quote(FALSE))
> test_loo_predictive_metric.R: 41: data <- base::paste0(e$code, " ", base::nchar(msg), "\n", (function (what, args, quote = FALSE, envir = parent.frame()) msg) if (callr_data$has_otel) { callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data){ if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { if (!is.list(args)) stop("second argument must be a list") if (quote) args <- lapply(args, enquote) .Internal(do.call(what, args, envir)) base::invokeRestart("muffleMessage")})(base::quote(function (path, shuffle) }{ }) asNamespace("testthat")$queue_task(path, shuffle)}), error = function(e) {}), base::quote(list("test_loo_predictive_metric.R", FALSE)), { envir = base::quote(<environment>), quote = base::quote(TRUE)) NULL
> test_loo_predictive_metric.R: 42:
> test_loo_predictive_metric.R: NULLbase::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, } if (FALSE) { base::try(base::stop(e)) } quote = TRUE)
> test_loo_predictive_metric.R: 43: base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), if (FALSE) { base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, base::q(save = "no", status = 1) quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", } compress = FALSE) base::invisible()
> test_loo_predictive_metric.R: }, interrupt = function(e) {44: { NULL NULLbase::withCallingHandlers({ } { if (FALSE) { NULL base::q(save = "no", status = 1) NULL } } base::invisible() base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), }) base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv,
> test_loo_predictive_metric.R: quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", An irrecoverable exception occurred. R is aborting now ...
> test_loo_predictive_metric.R: compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) { NULL NULL } base::invisible()}, error = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, interrupt = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", msg) if (callr_data$has_otel) { callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data) if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") } else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage") } })})
> test_loo_predictive_metric.R: 45: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 46: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> test_loo_predictive_metric.R: 47: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
> test_loo_predictive_metric.R: 48: doTryCatch(return(expr), name, parentenv, handler)
> test_loo_predictive_metric.R: 49: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), names[nh], parentenv, handlers[[nh]])
> test_loo_predictive_metric.R: 50: tryCatchList(expr, classes, parentenv, handlers)
> test_loo_predictive_metric.R: 51: base::tryCatch(base::withCallingHandlers({ { NULL NULL } base::saveRDS(base::do.call(base::do.call, base::c(base::readRDS("/Volumes/Temp/tmp/RtmpIL3H4b/callr-fun-122ba4f85a6dc"), base::list(envir = .GlobalEnv, quote = TRUE)), envir = .GlobalEnv, quote = TRUE), file = "/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", compress = FALSE) base::flush(base::stdout()) base::flush(base::stderr()) { NULL NULL } base::invisible()}, error = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, interrupt = function(e) { { callr_data <- base::as.environment("tools:callr")$`__callr_data__` err <- callr_data$err if (FALSE) { base::assign(".Traceback", base::.traceback(4), envir = callr_data) utils::dump.frames("__callr_dump__") base::assign(".Last.dump", .GlobalEnv$`__callr_dump__`, envir = callr_data) base::rm("__callr_dump__", envir = .GlobalEnv) } e <- err$process_call(e) e2 <- err$new_error("error in callr subprocess") class <- base::class class(e2) <- base::c("callr_remote_error", class(e2)) e2 <- err$add_trace_back(e2) cut <- base::which(e2$trace$scope == "global")[1] if (!base::is.na(cut)) { e2$trace <- e2$trace[-(1:cut), ] } if (callr_data$has_otel) { callr_data$otel_span$record_exception(e2) } base::saveRDS(base::list("error", e2, e), file = base::paste0("/Volumes/Temp/tmp/RtmpIL3H4b/callr-rs-result-122ba4f8dde4d", ".error")) }}, callr_message = function(e) { base::try({ callr_data <- base::as.environment("tools:callr")$`__callr_data__` pxlib <- callr_data$pxlib if (base::is.null(e$code)) { e$code <- "301" } msg <- base::paste0("base64::", pxlib$base64_encode(base::serialize(e, NULL))) data <- base::paste0(e$code, " ", base::nchar(msg), "\n", msg) if (callr_data$has_otel) { callr_data$otel_span$add_event("callr message", attributes = list(status_code = e$code)) } pxlib$write_fd(3L, data) if (base::inherits(e, "cli_message") && !base::is.null(base::findRestart("cli_message_handled"))) { base::invokeRestart("cli_message_handled") }
> test_loo_predictive_metric.R: else if (base::inherits(e, "message") && !base::is.null(base::findRestart("muffleMessage"))) { base::invokeRestart("muffleMessage") } })}), error = function(e) { { NULL NULL } if (FALSE) { base::try(base::stop(e)) } if (FALSE) { base::q(save = "no", status = 1) } base::invisible()}, interrupt = function(e) { { NULL NULL } if (FALSE) { base::q(save = "no", status = 1) } base::invisible()})
> test_loo_predictive_metric.R: An irrecoverable exception occurred. R is aborting now ...
Saving _problems/test_loo_predictive_metric-4.R
[ FAIL 2 | WARN 1 | SKIP 34 | PASS 847 ]
══ Skipped tests (34) ══════════════════════════════════════════════════════════
• On CRAN (32): 'test_loo_subsampling_cases.R:4:3',
'test_loo_subsampling_cases.R:256:3', 'test_E_loo.R:134:1',
'test_E_loo.R:142:1', 'test_compare.R:91:1', 'test_compare.R:122:1',
'test_compare.R:160:1', 'test_crps.R:27:1',
'test_deprecated_extractors.R:8:1', 'test_deprecated_extractors.R:106:1',
'test_gpdfit.R:1:1', 'test_kfold_helpers.R:139:1',
'test_loo_and_waic.R:23:1', 'test_loo_moment_matching.R:157:1',
'test_loo_moment_matching.R:247:1', 'test_loo_moment_matching.R:365:1',
'test_model_weighting.R:69:1', 'test_print_plot.R:41:1',
'test_print_plot.R:45:1', 'test_print_plot.R:151:1',
'test_print_plot.R:169:1', 'test_print_plot.R:175:1',
'test_print_plot.R:181:1', 'test_psis.R:13:1', 'test_psis.R:39:1',
'test_psislw.R:15:1', 'test_relative_eff.R:7:1', 'test_relative_eff.R:43:3',
'test_loo_subsampling.R:896:3', 'test_loo_subsampling.R:1077:3',
'test_tisis.R:76:1', 'test_tisis.R:213:1'
• Sys.info()[["sysname"]] == "Darwin" && R.version$arch == "aarch64" is TRUE
(2): 'test_loo_moment_matching.R:468:3', 'test_psis.R:157:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_loo_and_waic.R:30:3'): loo with cores=1 and cores=2 gives same results ──
Error in `vapply(x, FUN = match.arg(fun), FUN.VALUE = fun_val, item)`: values must be length 1000,
but FUN(X[[1]]) result is length 0
Backtrace:
▆
1. ├─base::suppressWarnings(loo(LLarr, r_eff = r_eff_arr, cores = 2)) at test_loo_and_waic.R:30:3
2. │ └─base::withCallingHandlers(...)
3. ├─loo::loo(LLarr, r_eff = r_eff_arr, cores = 2)
4. └─loo::loo.array(LLarr, r_eff = r_eff_arr, cores = 2)
5. └─loo:::importance_sampling.array(...)
6. └─loo:::do_importance_sampling(...)
7. └─loo:::psis_apply(lw_list, "log_weights", fun_val = numeric(S))
8. └─base::vapply(x, FUN = match.arg(fun), FUN.VALUE = fun_val, item)
── Error ('test_loo_predictive_metric.R:4:1'): (code run outside of `test_that()`) ──
Error in `vapply(x, FUN = match.arg(fun), FUN.VALUE = fun_val, item)`: values must be length 1000,
but FUN(X[[1]]) result is length 0
Backtrace:
▆
1. ├─loo::psis(-LL, r_eff = r_eff, cores = 2) at test_loo_predictive_metric.R:4:1
2. └─loo:::psis.matrix(-LL, r_eff = r_eff, cores = 2)
3. └─loo:::importance_sampling.matrix(...)
4. └─loo:::do_importance_sampling(...)
5. └─loo:::psis_apply(lw_list, "log_weights", fun_val = numeric(S))
6. └─base::vapply(x, FUN = match.arg(fun), FUN.VALUE = fun_val, item)
[ FAIL 2 | WARN 1 | SKIP 34 | PASS 847 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64