Last updated on 2026-06-27 23:51:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | 71.13 | 206.47 | 277.60 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 54.96 | 148.01 | 202.97 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 85.00 | 376.32 | 461.32 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 140.00 | 394.37 | 534.37 | ERROR | |
| r-devel-windows-x86_64 | 2.0.5 | 95.00 | 222.00 | 317.00 | OK | |
| r-patched-linux-x86_64 | 2.0.5 | 70.61 | 192.39 | 263.00 | OK | |
| r-release-linux-x86_64 | 2.0.5 | 70.02 | 194.77 | 264.79 | OK | |
| r-release-macos-arm64 | 2.0.5 | 15.00 | 65.00 | 80.00 | OK | |
| r-release-macos-x86_64 | 2.0.5 | 45.00 | 236.00 | 281.00 | OK | |
| r-release-windows-x86_64 | 2.0.5 | 95.00 | 221.00 | 316.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.5 | 13.00 | 63.00 | 76.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.5 | 44.00 | 219.00 | 263.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.5 | 114.00 | 299.00 | 413.00 | OK |
Version: 2.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.5
• Read the guide: run vignette("quickstart", package="harmony")
• Get help: Visit the website at <https://korsunskylab.github.io/harmony2/> and
report issues on <https://github.com/immunogenomics/harmony/issues>
>
> test_check("harmony")
253exists, retrying for cluster 26 3.45943
118exists, retrying for cluster 28 0.624635
7exists, retrying for cluster 33 0.87125
118exists, retrying for cluster 41 3.36873
147exists, retrying for cluster 42 3.01096
119exists, retrying for cluster 47 3.38714
Saving _problems/test_integration-40.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_integration.R:37:5'): increasing theta decreases chi2 between Cluster and Batch assign ──
Expected `sum(((obj0$O - obj0$E)^2)/obj0$E)` > `sum(((obj1$O - obj1$E)^2)/obj1$E)`.
Actual comparison: 376.2 <= 382.6
Difference: -6.4 <= 0
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc