Last updated on 2026-07-18 13:50:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.5 | 73.77 | 208.46 | 282.23 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.5 | 53.56 | 141.34 | 194.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.5 | 98.00 | 324.69 | 422.69 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.5 | 59.00 | 139.82 | 198.82 | OK | |
| r-devel-windows-x86_64 | 2.0.5 | 100.00 | 230.00 | 330.00 | OK | |
| r-patched-linux-x86_64 | 2.0.5 | 74.76 | 193.11 | 267.87 | OK | |
| r-release-linux-x86_64 | 2.0.5 | 67.87 | 192.41 | 260.28 | OK | |
| r-release-macos-arm64 | 2.0.5 | 15.00 | 65.00 | 80.00 | OK | |
| r-release-macos-x86_64 | 2.0.5 | 45.00 | 236.00 | 281.00 | OK | |
| r-release-windows-x86_64 | 2.0.5 | 100.00 | 223.00 | 323.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.0.5 | 13.00 | 63.00 | 76.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.5 | 44.00 | 219.00 | 263.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.5 | 112.00 | 305.00 | 417.00 | OK |
Version: 2.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [4s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(harmony)
Loading required package: Rcpp
• This is Harmony2 version 2.0.5
• Read the guide: run vignette("quickstart", package="harmony")
• Get help: Visit the website at <https://korsunskylab.github.io/harmony2/> and
report issues on <https://github.com/immunogenomics/harmony/issues>
>
> test_check("harmony")
173exists, retrying for cluster 32 1.43738
126exists, retrying for cluster 14 0.607527
82exists, retrying for cluster 14 3.40144
290exists, retrying for cluster 16 3.33984
121exists, retrying for cluster 3 3.21052
Saving _problems/test_integration-40.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_integration.R:37:5'): increasing theta decreases chi2 between Cluster and Batch assign ──
Expected `sum(((obj0$O - obj0$E)^2)/obj0$E)` > `sum(((obj1$O - obj1$E)^2)/obj1$E)`.
Actual comparison: 381.3 <= 383.8
Difference: -2.5 <= 0
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 12 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64