Last updated on 2026-10-24 17:51:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.1 | 82.69 | 508.66 | 591.35 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.8.1 | 67.02 | 333.34 | 400.36 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.8.1 | 68.00 | 342.36 | 410.36 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.8.1 | 72.00 | 334.79 | 406.79 | OK | |
| r-devel-windows-x86_64 | 0.8.1 | 123.00 | 780.00 | 903.00 | OK | |
| r-patched-linux-x86_64 | 0.8.1 | 90.80 | 473.89 | 564.69 | OK | |
| r-release-linux-x86_64 | 0.8.1 | 93.48 | 474.24 | 567.72 | OK | |
| r-release-macos-arm64 | 0.8.1 | 19.00 | 131.00 | 150.00 | OK | |
| r-release-macos-x86_64 | 0.8.1 | 59.00 | 575.00 | 634.00 | OK | |
| r-release-windows-x86_64 | 0.8.1 | 111.00 | 684.00 | 795.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.1 | 6.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.8.1 | 59.00 | 434.00 | 493.00 | OK | |
| r-oldrel-windows-x86_64 | 0.8.1 | 154.00 | 989.00 | 1143.00 | OK |
Version: 0.8.1
Check: examples
Result: ERROR
Running examples in ‘bigPLScox-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cv.coxDKgplsDR
> ### Title: Cross-validating a Direct Kernel group PLS model fitted on the
> ### (Deviance) Residuals
> ### Aliases: cv.coxDKgplsDR
> ### Keywords: models regression
>
> ### ** Examples
>
>
> data(micro.censure)
> data(Xmicro.censure_compl_imp)
> set.seed(123456)
> X_train_micro <- apply((as.matrix(Xmicro.censure_compl_imp)),
+ FUN="as.numeric",MARGIN=2)[1:80,]
> X_train_micro_df <- data.frame(X_train_micro)
> Y_train_micro <- micro.censure$survyear[1:80]
> C_train_micro <- micro.censure$DC[1:80]
>
> #Should be run with a higher value of nt (at least 10)
> (cv.coxDKgplsDR.res=cv.coxDKgplsDR(list(x=X_train_micro,time=Y_train_micro,
+ status=C_train_micro),ind.block.x=c(3,10,15),nt=2))
Kernel : rbfdot
Estimated_sigma 0.01257168
Error in a$specials[[i]] : subscript out of bounds
Calls: cv.coxDKgplsDR -> predict -> predict.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [16s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bigPLScox)
>
> test_check("bigPLScox")
Saving _problems/test-big-features-42.R
Saving _problems/test-big_pls_cox-66.R
Saving _problems/test-big_pls_cox_gd-72.R
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 89 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-big-features.R:41:1'): Test big features ───────────────────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-big-features.R:41:1
2. │ └─base::withCallingHandlers(...)
3. └─bigPLScox::cv.coxgpls(...)
4. ├─stats::predict(train.fit)
5. └─survival:::predict.coxph(train.fit)
6. └─stats::delete.response(Terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-big_pls_cox.R:66:3'): big_pls_cox approximates plsRcox ─────────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(X, time, status, nt = 3, verbose = FALSE) at test-big_pls_cox.R:66:3
2. └─plsRcox:::plsRcoxmodel.default(X, time, status, nt = 3, verbose = FALSE)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
── Error ('test-big_pls_cox_gd.R:72:3'): big_pls_cox approximates plsRcox ──────
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─plsRcox::plsRcox(X, time, status, nt = 3, verbose = FALSE) at test-big_pls_cox_gd.R:72:3
2. └─plsRcox:::plsRcoxmodel.default(X, time, status, nt = 3, verbose = FALSE)
3. ├─base::as.matrix(predict(tempregcox, type = "expected"))
4. ├─stats::predict(tempregcox, type = "expected")
5. ├─stats::predict(tempregcox, type = "expected")
6. └─survival:::predict.coxph(tempregcox, type = "expected")
7. ├─stats::model.matrix(object, data = mf)
8. └─survival:::model.matrix.coxph(object, data = mf)
9. └─stats::delete.response(object$terms)
10. └─stats (local) off(a$specials[[i]])
[ FAIL 3 | WARN 0 | SKIP 0 | PASS 89 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.8.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘survcomp’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64