Last updated on 2026-04-20 17:53:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.3.2 | 249.06 | 148.25 | 397.31 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.3.2 | 160.73 | 88.68 | 249.41 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.1.3.2 | 400.00 | 249.55 | 649.55 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.1.3.2 | 463.00 | 210.03 | 673.03 | OK | |
| r-devel-macos-arm64 | 2.1.3.2 | 44.00 | 6.00 | 50.00 | OK | |
| r-devel-windows-x86_64 | 2.1.3.2 | 13.00 | 6.00 | 19.00 | ERROR | |
| r-patched-linux-x86_64 | 2.1.3.2 | 214.94 | 127.48 | 342.42 | OK | |
| r-release-linux-x86_64 | 2.1.3.2 | 177.92 | 123.44 | 301.36 | OK | |
| r-release-macos-arm64 | 2.1.3.2 | OK | ||||
| r-release-macos-x86_64 | 2.1.3.2 | 123.00 | 96.00 | 219.00 | OK | |
| r-release-windows-x86_64 | 2.1.3.2 | 243.00 | 171.00 | 414.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.3.2 | NOTE | ||||
| r-oldrel-macos-x86_64 | 2.1.3.2 | 121.00 | 117.00 | 238.00 | NOTE | |
| r-oldrel-windows-x86_64 | 2.1.3.2 | 278.00 | 208.00 | 486.00 | OK |
Version: 2.1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘VarSelLCM.Rmd’ using rmarkdown
*** caught segfault ***
address 0x1f29, cause 'memory not mapped'
Traceback:
1: OptimizePenLike(obj, pen)
2: FUN(X[[i]], ...)
3: FUN(X[[i]], ...)
4: lapply(X = S, FUN = FUN, ...)
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
9: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
10: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
11: FUN(X[[i]], ...)
12: lapply(seq_len(cores), inner.do)
13: mclapply(X = as.list(rep(0, nb.cpus)), FUN = VarSelModelMLE, obj = reference, mc.cores = nb.cpus)
14: ParallelCriterion(reference, min(reference@strategy@initModel, nbcores))
15: VarSelCluster.singleg(x, gvals[g], vbleSelec, crit.varsel, initModel, nbcores, discrim, nbSmall, iterSmall, nbKeep, iterKeep, tolKeep)
16: VarSelCluster(x, gvals = 1:3, nbcores = 2, crit.varsel = "BIC")
17: eval(expr, envir)
18: eval(expr, envir)
19: withVisible(eval(expr, envir))
20: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
21: eval(call)
22: eval(call)
23: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
24: doWithOneRestart(return(expr), restart)
25: withOneRestart(expr, restarts[[1L]])
26: withRestartList(expr, restarts[-nr])
27: doWithOneRestart(return(expr), restart)
28: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
29: withRestartList(expr, restarts)
30: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
31: evaluate::evaluate(...)
32: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
33: in_dir(input_dir(), expr)
34: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
35: eng_r(options)
36: block_exec(params)
37: call_block(x)
38: process_group(group)
39: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
40: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
41: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
42: process_file(text, output)
43: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
44: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
45: vweave_rmarkdown(...)
46: engine$weave(file, quiet = quiet, encoding = enc)
47: doTryCatch(return(expr), name, parentenv, handler)
48: tryCatchOne(expr, names, parentenv, handlers[[1L]])
49: tryCatchList(expr, classes, parentenv, handlers)
50: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
51: tools::buildVignettes(dir = "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/VarSelLCM.Rcheck/vign_test/VarSelLCM", skip = TRUE, ser_elibs = "/tmp/RtmpofGXwd/file6f4cc588c0c0.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from VarSelLCM.Rmd:55-62 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `reference[[1]]@strategy`:
! no applicable method for `@` applied to an object of class "NULL"
---
Backtrace:
▆
1. └─VarSelLCM::VarSelCluster(x, gvals = 1:3, nbcores = 2, crit.varsel = "BIC")
2. └─VarSelLCM:::VarSelCluster.singleg(...)
3. └─VarSelLCM:::ParallelCriterion(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'VarSelLCM.Rmd' failed with diagnostics:
no applicable method for `@` applied to an object of class "NULL"
--- failed re-building ‘VarSelLCM.Rmd’
SUMMARY: processing the following file failed:
‘VarSelLCM.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.1.3.2
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-windows-x86_64
Version: 2.1.3.2
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
libs 7.7Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64