Last updated on 2025-08-11 23:48:44 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.4 | 7.57 | 178.31 | 185.88 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.1.4 | 5.56 | 119.90 | 125.46 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.1.4 | 293.64 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.4 | 301.53 | OK | |||
| r-devel-windows-x86_64 | 2.1.4 | 10.00 | 345.00 | 355.00 | ERROR | |
| r-patched-linux-x86_64 | 2.1.4 | 9.55 | 172.54 | 182.09 | OK | |
| r-release-linux-x86_64 | 2.1.4 | 7.42 | 170.36 | 177.78 | OK | |
| r-release-macos-arm64 | 2.1.4 | 326.00 | OK | |||
| r-release-macos-x86_64 | 2.1.4 | 283.00 | OK | |||
| r-release-windows-x86_64 | 2.1.4 | 11.00 | 322.00 | 333.00 | OK | |
| r-oldrel-macos-arm64 | 2.1.4 | 221.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.1.4 | 312.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.1.4 | 14.00 | 399.00 | 413.00 | OK |
Version: 2.1.4
Check: tests
Result: ERROR
Running 'testthat.R' [53s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(PubChemR)
>
> # Functions used globally in package tests (testthat) ----
> allSuccess <- function(object){
+ all(unlist(lapply(object$result, "[[", "success")))
+ }
>
> testRequest <- function(object, ...){
+ test_that(paste0("pulling via '", request_args(object, "namespace"), "' is succesfull"), {
+ expect_true(allSuccess(object))
+ })
+
+ test_that("prints output to the R Console", {
+ expect_output(print(object))
+ })
+ }
>
> # Set 'skipTests' FALSE to run test codes. This is set TRUE to skip
> # all tests on GitHub actions since some of PubChem requests were incomplete due to
> # timeout and/or API related issues. BUILD & CHECK actions on GitHub returns error
> # even if all tests were passed on local installations of R.
> skipTests <- FALSE
>
> if (!skipTests){
+ test_check("PubChemR")
+ }
The file has been saved to 'D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF/aspirin.json'
The file has been saved to 'D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF/aspirin.json'
The file has been saved to 'D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF/aspirin.json'
The file has been saved to 'D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF/aspirin.json'
Error in file(con, "r") : cannot open the connection
Request failed [400]. Retrying in 3 seconds...
Request failed [400]. Retrying in 6.3 seconds...
SDF file saved successfully:
File Name: 'aspirin_20250810_083749.sdf'
Saved at: D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF
'path' is not specified. Saving files into a temporary folder.
SDF file saved successfully:
File Name: 'file.sdf'
Saved at: D:\temp\2025_08_10_01_50_00_14715\RtmpgLL4CF
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
PubChem Substance Details (comment)
Same as: <a href="http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=7847177">D00109</a>
Is a reactant of enzyme EC: 3.1.1.55
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 169 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-download.R:119:3'): create 'path' if it does not exist. ──────
all(file.exists(json_file), file.exists(sdf_file)) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 169 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64