Last updated on 2026-08-07 17:53:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 41.99 | 408.38 | 450.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 30.60 | 283.37 | 313.97 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 36.00 | 288.71 | 324.71 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 33.00 | 278.80 | 311.80 | OK | |
| r-devel-windows-x86_64 | 1.0.1 | 45.00 | 334.00 | 379.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 45.54 | 382.98 | 428.52 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 41.24 | 391.30 | 432.54 | OK | |
| r-release-macos-arm64 | 1.0.1 | 9.00 | 76.00 | 85.00 | ERROR | |
| r-release-macos-x86_64 | 1.0.1 | 29.00 | 261.00 | 290.00 | ERROR | |
| r-release-windows-x86_64 | 1.0.1 | 46.00 | 345.00 | 391.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 10.00 | 77.00 | 87.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.1 | 29.00 | 287.00 | 316.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.1 | 63.00 | 478.00 | 541.00 | OK |
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:82-94 [fetch-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://portal.boldsystems.org/api/documents/eAErSaywSk_NKy22Ci4pSi0oyU9OLchIzCkttk4rzckBALodDBg%3D/download?format=tsv&fields=processid,marker_code'
---
Backtrace:
▆
1. └─BOLDconnectR::bold.public.search(taxonomy = list("Streptocephalus"))
2. └─BOLDconnectR:::obtain_data(step4)
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. └─utils::download.file(download_url, destfile = temp_file, quiet = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
cannot open URL 'https://portal.boldsystems.org/api/documents/eAErSaywSk_NKy22Ci4pSi0oyU9OLchIzCkttk4rzckBALodDBg%3D/download?format=tsv&fields=processid,marker_code'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘boldconnectr_workflow.Rmd’ using rmarkdown
2026-08-08 02:12:26.537 R[10748:502876] XType: Using static font registry.
Quitting from boldconnectr_workflow.Rmd:121-132 [align-data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'muscle'
---
Backtrace:
▆
1. ├─BOLDconnectR::bold.analyze.align(...)
2. │ └─BOLDconnectR:::gen.msa.res(...)
3. └─base::loadNamespace(x)
4. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
5. └─base (local) withOneRestart(expr, restarts[[1L]])
6. └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'boldconnectr_workflow.Rmd' failed with diagnostics:
there is no package called 'muscle'
--- failed re-building ‘boldconnectr_workflow.Rmd’
SUMMARY: processing the following file failed:
‘boldconnectr_workflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64