To cite topolow in publications, please use the Bioinformatics paper for the method and its applications, and the arXiv preprint for the mathematical properties of the algorithm.

Arhami O, Rohani P (2025). “Topolow: a mapping algorithm for antigenic cross-reactivity and binding affinity assays.” Bioinformatics, 41(7), btaf372. ISSN 1367-4811. doi:10.1093/bioinformatics/btaf372.

Arhami O, Rohani P (2025). “Topolow: Force-Directed Euclidean Embedding of Dissimilarity Data with Robustness Against Non-Metricity and Sparsity.” doi:10.48550/arXiv.2508.01733. 2508.01733, https://arxiv.org/abs/2508.01733.

Corresponding BibTeX entries:

  @Article{,
    title = {Topolow: a mapping algorithm for antigenic
      cross-reactivity and binding affinity assays},
    author = {Omid Arhami and Pejman Rohani},
    journal = {Bioinformatics},
    year = {2025},
    volume = {41},
    number = {7},
    pages = {btaf372},
    doi = {10.1093/bioinformatics/btaf372},
    issn = {1367-4811},
  }

  @Misc{,
    title = {Topolow: Force-Directed Euclidean Embedding of
      Dissimilarity Data with Robustness Against Non-Metricity and
      Sparsity},
    author = {Omid Arhami and Pejman Rohani},
    year = {2025},
    eprint = {2508.01733},
    archiveprefix = {arXiv},
    primaryclass = {cs.CG},
    doi = {10.48550/arXiv.2508.01733},
    url = {https://arxiv.org/abs/2508.01733},
  }