This package is part of RAVE. To cite this package in publications use, please check the following Neuroimage paper from Beauchamp's lab.

Magnotti JF, Wang Z, Beauchamp MS (2020). “RAVE: Comprehensive open-source software for reproducible analysis and visualization of intracranial EEG data.” NeuroImage, 223, 117341. doi:10.1016/j.neuroimage.2020.117341.

Please check https://rave.wiki for more information.

If you use `register_volume3d` for imaging registration, please cite the following paper.

Avants BB, Epstein CL, Grossman M, Gee JC (2008). “Symmetric diffeomorphic image registration with cross-correlation: evaluating automated labeling of elderly and neurodegenerative brain.” Medical image analysis, 12(1), 26-41. doi:10.1016/j.media.2007.06.004.

If you use the mris_*() functions for surface manipulation, please also cite:

Fischl B, Sereno MI, Dale AM (1999). “Cortical surface-based analysis: II: inflation, flattening, and a surface-based coordinate system.” Neuroimage, 9(2), 195-207. doi:10.1006/nimg.1998.0396.

If you use the carla() function, please also cite the original CARLA manuscript:

Huang H, Valencia GO, Gregg NM, Osman GM, Montoya MN, Worrell GA, Miller KJ, Hermes D (2024). “CARLA: Adjusted common average referencing for cortico-cortical evoked potential data.” Journal of Neuroscience Methods, 407, 110153. doi:10.1016/j.jneumeth.2024.110153.

If you use carla(..., virtual_reference = TRUE), please also cite the modified CARLA manuscript:

Huang H, Adkinson JA, Jensen MA, Hasen M, Danstrom IA, Bijanki KR, Gregg NM, Miller KJ, Sheth SA, Hermes D, Bartoli E (2025). “Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data.” Journal of Neuroscience Methods, 419, 110461. doi:10.1016/j.jneumeth.2025.110461.

If you use the crp() function, please also cite the original CRP manuscript:

Miller KJ, Mueller K, Valencia GO, Huang H, Gregg NM, Worrell GA, Hermes D (2023). “Canonical response parameterization: Quantifying the structure of responses to single-pulse intracranial electrical brain stimulation.” PLOS Computational Biology, 19(5), e1011105. doi:10.1371/journal.pcbi.1011105.

If you use the bpc() function, please also cite the original BPC manuscript:

Miller KJ, Mueller K, Hermes D (2021). “Basis profile curve identification to understand electrical stimulation effects in human brain networks.” PLOS Computational Biology, 17(9), e1008710. doi:10.1371/journal.pcbi.1008710.

Corresponding BibTeX entries:

  @Article{,
    title = {{RAVE}: Comprehensive open-source software for
      reproducible analysis and visualization of intracranial EEG
      data},
    author = {John F. Magnotti and Zhengjia Wang and Michael S.
      Beauchamp},
    journal = {NeuroImage},
    year = {2020},
    volume = {223},
    pages = {117341},
    doi = {10.1016/j.neuroimage.2020.117341},
  }

  @Article{,
    title = {Symmetric diffeomorphic image registration with
      cross-correlation: evaluating automated labeling of elderly and
      neurodegenerative brain},
    author = {Brian B. Avants and Charles L. Epstein and Murray
      Grossman and James C. Gee},
    journal = {Medical image analysis},
    year = {2008},
    volume = {12},
    pages = {26-41},
    number = {1},
    doi = {10.1016/j.media.2007.06.004},
  }

  @Article{,
    title = {Cortical surface-based analysis: II: inflation,
      flattening, and a surface-based coordinate system},
    author = {Bruce Fischl and Martin I. Sereno and Anders M. Dale},
    journal = {Neuroimage},
    year = {1999},
    volume = {9},
    number = {2},
    pages = {195-207},
    doi = {10.1006/nimg.1998.0396},
  }

  @Article{,
    title = {{CARLA}: Adjusted common average referencing for
      cortico-cortical evoked potential data},
    author = {Harvey Huang and Gabriela Ojeda Valencia and Nicholas M.
      Gregg and Gamaleldin M. Osman and Morgan N. Montoya and Gregory
      A. Worrell and Kai J. Miller and Dora Hermes},
    journal = {Journal of Neuroscience Methods},
    year = {2024},
    volume = {407},
    pages = {110153},
    doi = {10.1016/j.jneumeth.2024.110153},
  }

  @Article{,
    title = {Proper reference selection and re-referencing to mitigate
      bias in single pulse electrical stimulation data},
    author = {Harvey Huang and Joshua A. Adkinson and Michael A. Jensen
      and Mohammed Hasen and Isabel A. Danstrom and Kelly R. Bijanki
      and Nicholas M. Gregg and Kai J. Miller and Sameer A. Sheth and
      Dora Hermes and Eleonora Bartoli},
    journal = {Journal of Neuroscience Methods},
    year = {2025},
    volume = {419},
    pages = {110461},
    doi = {10.1016/j.jneumeth.2025.110461},
  }

  @Article{,
    title = {Canonical response parameterization: Quantifying the
      structure of responses to single-pulse intracranial electrical
      brain stimulation},
    author = {Kai J. Miller and Klaus-Robert Mueller and Gabriela Ojeda
      Valencia and Harvey Huang and Nicholas M. Gregg and Gregory A.
      Worrell and Dora Hermes},
    journal = {PLOS Computational Biology},
    year = {2023},
    volume = {19},
    number = {5},
    pages = {e1011105},
    doi = {10.1371/journal.pcbi.1011105},
  }

  @Article{,
    title = {Basis profile curve identification to understand
      electrical stimulation effects in human brain networks},
    author = {Kai J. Miller and Klaus-Robert Mueller and Dora Hermes},
    journal = {PLOS Computational Biology},
    year = {2021},
    volume = {17},
    number = {9},
    pages = {e1008710},
    doi = {10.1371/journal.pcbi.1008710},
  }