Phytoclass uses three input matrices:
S : The pigment values from field samples.F : Defines which pigments are present in each
taxa.min_max : Specifies limits of taxa contributions for
each pigment.The F and min_max matrices built into
phytoclass are designed for general use. Specifying maxtrices tailored
to a specific study region can improve accuracy of results.
In this example we provide an F and min_max
matrices which have been derived from a standard deviation calculation
on pigment-to-chlorophyll ratios found in literature about the Southern
Ocean.
## here() starts at /tmp/RtmphulPIZ/Rbuild1b2db5e2085b6/phytoclass# Load the sample matrix from a file
# If your file does not contain sample names (e.g., Sample_1, Sample_2), you may omit `row.names = 1`
# In that case, do: S_matrix <- read.csv(here("vignettes/custom-example-S.csv"))
S_matrix <- read.csv(here("vignettes/custom-example-S.csv"), row.names = 1) # pigment-taxa occurrence matrix (specific to an oceanographic region)
F_matrix <- read.csv(here("vignettes/custom-example-F.csv"))# === remove numeric rownames introduced by read.csv
if (all(grepl("^[0-9]+$", rownames(F_matrix)))) {
print("dropping unneeded numeric index")
# Set the first column as row names
rownames(F_matrix) <- F_matrix[[1]]
# Remove the first column
F_matrix <- F_matrix[, -1]
}## [1] "dropping unneeded numeric index"# === remove numeric rownames introduced by read.csv
if (all(grepl("^[0-9]+$", rownames(min_max_matrix)))) {
print("dropping unneeded numeric index")
# Set the first column as row names
rownames(min_max_matrix) <- min_max_matrix[[1]]
# Remove the first column
min_max_matrix <- min_max_matrix[, -1]
}## [1] "dropping unneeded numeric index"phytoclass::simulated_annealing(
S_matrix,
Fmat = F_matrix,
user_defined_min_max = min_max_matrix,
verbose = FALSE
)## $`F matrix`
## Per X19but Fuco Neox Pra Viol X19hex
## Prasinophytes 0.0000000 0.0000 0.0000 0.1025 0.2153 0.09908294 0.0000
## Chlorophytes 0.0000000 0.0000 0.0000 0.0096 0.0000 0.01510000 0.0000
## Cryptophytes 0.0000000 0.0000 0.0000 0.0000 0.0000 0.00000000 0.0000
## Diatoms-2 0.0000000 0.0000 0.7382 0.0000 0.0000 0.00000000 0.0000
## Dinoflagellates-1 0.3441461 0.0000 0.0000 0.0000 0.0000 0.00000000 0.0000
## Haptophytes 0.0000000 0.1038 0.4536 0.0000 0.0000 0.00000000 0.6233
## Pelagophytes 0.0000000 1.2339 0.8887 0.0000 0.0000 0.00000000 0.0000
## Syn 0.0000000 0.0000 0.0000 0.0000 0.0000 0.00000000 0.0000
## Allo Zea Chl_b Tchla
## Prasinophytes 0.0000 0.1353 0.8813136 1
## Chlorophytes 0.0000 0.0063 0.1667001 1
## Cryptophytes 0.3717 0.0000 0.0000000 1
## Diatoms-2 0.0000 0.0000 0.0000000 1
## Dinoflagellates-1 0.0000 0.0000 0.0000000 1
## Haptophytes 0.0000 0.0000 0.0000000 1
## Pelagophytes 0.0000 0.0000 0.0000000 1
## Syn 0.0000 0.9708 0.0000000 1
##
## $RMSE
## [1] 0.01473269
##
## $`condition number`
## [1] 1777.271
##
## $`Class abundances`
## Prasinophytes Chlorophytes Cryptophytes Diatoms-2 Dinoflagellates-1
## Sample_1 0.04958334 0.2550956876 0.005272034 0.00000000 1.053540e-04
## Sample_2 0.01587994 0.0522225231 0.005851697 0.02797513 5.357483e-04
## Sample_3 0.03493198 0.2047015918 0.018451272 0.31009296 7.971365e-04
## Sample_4 0.04460103 0.1794299596 0.017094162 0.33094853 7.655838e-04
## Sample_5 0.06114758 0.0318891446 0.004170285 0.37866182 2.501189e-04
## Sample_6 0.04400584 0.0192769213 0.000000000 0.26768899 2.929714e-02
## Sample_7 0.02913208 0.0001524856 0.001725782 0.13654138 0.000000e+00
## Sample_8 0.01598560 0.0000000000 0.011290176 0.43833669 0.000000e+00
## Sample_9 0.02230798 0.0000000000 0.157954613 0.67187960 0.000000e+00
## Sample_10 0.03313495 0.0024990281 0.007645400 0.08667947 0.000000e+00
## Sample_11 0.15362997 0.0242771967 0.078800343 0.55214863 0.000000e+00
## Sample_12 0.09489343 0.0041708280 0.000000000 0.30683761 0.000000e+00
## Sample_13 0.08926455 0.0129001056 0.000000000 0.17643781 0.000000e+00
## Sample_14 0.15420472 0.0000000000 0.021265004 0.27512264 0.000000e+00
## Sample_15 0.25052804 0.0000000000 0.098686503 0.82816675 1.838696e-03
## Sample_16 0.22907630 0.0000000000 0.019434191 0.24149439 3.194898e-05
## Sample_17 0.47091295 0.1861775714 0.046189045 0.76553627 8.993191e-04
## Sample_18 0.16098823 0.0000000000 0.026899353 0.22949786 0.000000e+00
## Sample_19 0.30910267 0.0000000000 0.054837823 0.48812809 5.085209e-04
## Sample_20 0.20421550 0.1531927223 0.062802133 0.33141933 0.000000e+00
## Sample_21 0.27997734 0.0000000000 0.046491130 0.43902272 2.563463e-04
## Sample_22 0.14357332 0.1414502532 0.048523456 0.69352761 0.000000e+00
## Sample_23 0.11722560 0.1106936190 0.038778799 0.48171195 1.441393e-04
## Sample_24 0.06399802 0.0000000000 0.029528679 0.14109286 0.000000e+00
## Sample_25 0.08386232 0.0531424896 0.035353577 0.18467599 0.000000e+00
## Sample_26 0.08732224 0.0000000000 0.021608330 0.19641652 0.000000e+00
## Sample_27 0.04580931 0.0000000000 0.014939104 0.12254672 0.000000e+00
## Sample_28 0.04827033 0.0000000000 0.012647082 0.10425779 0.000000e+00
## Sample_29 0.08349807 0.0627955732 0.022970575 0.04255416 0.000000e+00
## Haptophytes Pelagophytes Syn
## Sample_1 0.13478517 0.013668416 0.000000e+00
## Sample_2 0.03359779 0.009393387 2.537837e-04
## Sample_3 0.03203659 0.011688473 0.000000e+00
## Sample_4 0.03454851 0.013312237 0.000000e+00
## Sample_5 0.03563253 0.018448513 0.000000e+00
## Sample_6 0.03015956 0.015271545 0.000000e+00
## Sample_7 0.03631617 0.007832101 0.000000e+00
## Sample_8 0.20457494 0.018271517 4.107007e-05
## Sample_9 0.20855887 0.023779401 4.195306e-04
## Sample_10 0.06440856 0.011632596 0.000000e+00
## Sample_11 0.18908334 0.023018351 1.870290e-02
## Sample_12 0.04616311 0.012034989 1.710436e-02
## Sample_13 0.04290168 0.014049364 5.354388e-03
## Sample_14 0.03088310 0.007814725 0.000000e+00
## Sample_15 0.18529346 0.008622366 8.028383e-03
## Sample_16 0.06482516 0.016252937 0.000000e+00
## Sample_17 0.23550981 0.036114517 0.000000e+00
## Sample_18 0.12834755 0.031937690 0.000000e+00
## Sample_19 0.18554139 0.035812463 0.000000e+00
## Sample_20 0.19713290 0.042138405 0.000000e+00
## Sample_21 0.14818524 0.038115622 0.000000e+00
## Sample_22 0.20426046 0.018133376 0.000000e+00
## Sample_23 0.15044659 0.020065786 0.000000e+00
## Sample_24 0.09307653 0.016894226 4.065457e-03
## Sample_25 0.08434634 0.014080481 1.810657e-04
## Sample_26 0.03407989 0.010346606 0.000000e+00
## Sample_27 0.03375690 0.015970401 3.696081e-03
## Sample_28 0.03407574 0.009362711 3.093437e-03
## Sample_29 0.07232533 0.017325264 0.000000e+00
##
## $Figure
##
## $MAE
## Per X19but Fuco Neox Pra Viol
## 5.891586e-05 1.113752e-05 2.745317e-03 2.570075e-03 3.932779e-03 3.910356e-03
## X19hex Allo Zea Chl_b Tchla
## 6.623717e-05 8.822851e-05 3.282463e-03 5.499043e-03 3.077751e-02
##
## $Error
## Per X19but Fuco Neox Pra
## Sample_1 -4.712620e-05 1.618084e-04 -0.0123622064 -0.0023718179 4.860272e-03
## Sample_2 -5.905538e-04 3.358032e-05 -0.0140113388 -0.0018705382 4.697809e-03
## Sample_3 -2.549694e-04 1.449818e-05 -0.0060493444 0.0016189470 2.746438e-03
## Sample_4 -2.372229e-04 1.348907e-05 -0.0056282931 0.0014641669 3.069674e-03
## Sample_5 -8.524683e-05 4.847341e-06 -0.0020225460 0.0037871537 4.839097e-04
## Sample_6 1.798456e-05 -1.022646e-06 0.0004266975 0.0038017982 1.501359e-03
## Sample_7 0.000000e+00 -1.094871e-05 0.0045683323 0.0014511851 2.145810e-03
## Sample_8 0.000000e+00 -3.068134e-06 0.0012801747 0.0014986424 2.198772e-03
## Sample_9 0.000000e+00 -1.601925e-06 0.0006684008 0.0012993282 1.321271e-03
## Sample_10 0.000000e+00 -4.005629e-06 0.0016713427 0.0009795766 1.249132e-03
## Sample_11 0.000000e+00 -2.050663e-06 0.0008556361 0.0005017762 3.344187e-04
## Sample_12 0.000000e+00 -4.146340e-06 0.0017300543 0.0077611939 -1.459787e-03
## Sample_13 0.000000e+00 -1.552154e-06 0.0006476339 0.0040580684 2.049329e-05
## Sample_14 0.000000e+00 -1.050185e-05 0.0043818827 0.0028737887 9.861861e-03
## Sample_15 -2.246773e-04 1.277570e-05 -0.0053306414 0.0066739334 8.341908e-04
## Sample_16 -9.245762e-06 5.257364e-07 -0.0002193628 0.0009335792 1.455862e-02
## Sample_17 -8.917241e-05 5.070559e-06 -0.0021156836 -0.0009813651 5.094369e-03
## Sample_18 0.000000e+00 -7.166707e-07 0.0002990298 -0.0004251170 1.003339e-02
## Sample_19 -7.841669e-05 4.458963e-06 -0.0018604957 -0.0010817042 6.695243e-03
## Sample_20 0.000000e+00 -4.290235e-06 0.0017900944 -0.0031826416 2.767647e-03
## Sample_21 -4.496837e-05 2.557010e-06 -0.0010669089 -0.0032136525 9.232255e-03
## Sample_22 0.000000e+00 -7.039618e-07 0.0002937270 -0.0016594278 1.019145e-03
## Sample_23 -2.897569e-05 1.647628e-06 -0.0006874704 0.0009143015 1.040752e-03
## Sample_24 0.000000e+00 -1.221480e-06 0.0005096606 0.0094423113 -1.885252e-03
## Sample_25 0.000000e+00 -4.085048e-06 0.0017044804 0.0004704821 -5.776688e-04
## Sample_26 0.000000e+00 -2.752579e-06 0.0011485096 -0.0005688565 1.063928e-02
## Sample_27 0.000000e+00 -4.766380e-06 0.0019887650 0.0043093557 5.839304e-03
## Sample_28 0.000000e+00 -3.491199e-06 0.0014566977 0.0023185562 6.754782e-03
## Sample_29 0.000000e+00 -6.803603e-06 0.0028387933 0.0030189053 1.127678e-03
## Viol X19hex Allo Zea Chl_b
## Sample_1 -0.0012853640 3.153992e-04 -4.363276e-05 -8.132051e-03 3.260277e-03
## Sample_2 -0.0011454670 -3.344868e-04 -5.467764e-04 -2.093498e-04 -7.039211e-03
## Sample_3 -0.0060897135 -1.444135e-04 -2.360687e-04 -1.781393e-03 -4.695701e-06
## Sample_4 -0.0064183704 -1.343619e-04 -2.196377e-04 -2.579854e-03 7.380788e-04
## Sample_5 -0.0064770983 -4.828339e-05 -7.892753e-05 -4.872592e-04 1.485854e-03
## Sample_6 -0.0062557032 1.018637e-05 0.000000e+00 -4.177447e-03 3.821128e-03
## Sample_7 -0.0014677758 1.090579e-04 1.782739e-04 -7.773991e-03 5.214977e-03
## Sample_8 -0.0012204617 3.056107e-05 4.995734e-05 1.912767e-05 -3.915349e-03
## Sample_9 0.0008845869 1.595645e-05 2.608357e-05 9.986881e-06 -3.970120e-03
## Sample_10 -0.0010944252 3.989926e-05 6.522223e-05 -3.946189e-03 2.374755e-03
## Sample_11 -0.0079199186 2.042624e-05 3.339021e-05 1.278445e-05 5.368366e-03
## Sample_12 -0.0102605643 4.130086e-05 0.000000e+00 2.584953e-05 4.449930e-03
## Sample_13 -0.0132797330 1.546069e-05 0.000000e+00 9.676594e-06 7.218098e-03
## Sample_14 -0.0054458128 1.046068e-04 1.709979e-04 -4.307068e-03 -9.841758e-03
## Sample_15 0.0053339383 -1.272562e-04 -2.080222e-04 -7.964754e-05 -1.165363e-02
## Sample_16 0.0037780633 -5.236755e-06 -8.560379e-06 -1.463623e-02 -1.300119e-02
## Sample_17 0.0053716017 -5.050683e-05 -8.256212e-05 -9.980034e-03 -1.668496e-03
## Sample_18 -0.0039001311 7.138614e-06 1.166929e-05 -4.257557e-03 -9.185588e-03
## Sample_19 -0.0018343057 -4.441483e-05 -7.260371e-05 -9.051623e-03 3.901390e-04
## Sample_20 -0.0013790877 4.273417e-05 6.985637e-05 -5.058616e-03 4.612688e-03
## Sample_21 -0.0022935886 -2.546987e-05 -4.163489e-05 -9.234583e-03 -1.574502e-03
## Sample_22 -0.0012973920 7.012023e-06 1.146236e-05 -1.243607e-03 2.011122e-03
## Sample_23 -0.0014892375 -1.641169e-05 -2.682774e-05 -1.960600e-03 6.795799e-04
## Sample_24 0.0033171622 1.216691e-05 1.988892e-05 7.615071e-06 -7.064220e-03
## Sample_25 -0.0004445056 4.069035e-05 6.651539e-05 2.546742e-05 1.130179e-03
## Sample_26 -0.0032669434 2.741789e-05 4.481927e-05 -1.754705e-03 -1.321812e-02
## Sample_27 -0.0006859226 4.747695e-05 7.760926e-05 2.971504e-05 -1.283114e-02
## Sample_28 0.0030608889 3.477513e-05 5.684595e-05 2.176518e-05 -1.579449e-02
## Sample_29 -0.0067025584 6.776932e-05 1.107806e-04 -4.377640e-03 5.954563e-03
## Tchla
## Sample_1 0.014596467
## Sample_2 0.182913102
## Sample_3 0.078972064
## Sample_4 0.073475388
## Sample_5 0.026403627
## Sample_6 -0.005570386
## Sample_7 -0.059637972
## Sample_8 -0.016712230
## Sample_9 -0.008725738
## Sample_10 -0.021818791
## Sample_11 -0.011170028
## Sample_12 -0.022585251
## Sample_13 -0.008454633
## Sample_14 -0.057203938
## Sample_15 0.069589650
## Sample_16 0.002863704
## Sample_17 0.027619505
## Sample_18 -0.003903729
## Sample_19 0.024288118
## Sample_20 -0.023369053
## Sample_21 0.013928121
## Sample_22 -0.003834503
## Sample_23 0.008974684
## Sample_24 -0.006653440
## Sample_25 -0.022251393
## Sample_26 -0.014993389
## Sample_27 -0.025962627
## Sample_28 -0.019016677
## Sample_29 -0.037059449
##
## $F_mat_iter
## iter phyto pigment ratio
## 1 0 Dinoflagellates-1 Per 1.000000000
## 2 0 Haptophytes X19but 1.000000000
## 3 0 Pelagophytes X19but 1.000000000
## 4 0 Diatoms-2 Fuco 1.000000000
## 5 0 Haptophytes Fuco 1.000000000
## 6 0 Pelagophytes Fuco 1.000000000
## 7 0 Prasinophytes Neox 1.000000000
## 8 0 Chlorophytes Neox 1.000000000
## 9 0 Prasinophytes Pra 1.000000000
## 10 0 Prasinophytes Viol 1.000000000
## 11 0 Chlorophytes Viol 1.000000000
## 12 0 Haptophytes X19hex 1.000000000
## 13 0 Cryptophytes Allo 1.000000000
## 14 0 Prasinophytes Zea 1.000000000
## 15 0 Chlorophytes Zea 1.000000000
## 16 0 Syn Zea 1.000000000
## 17 0 Prasinophytes Chl_b 1.000000000
## 18 0 Chlorophytes Chl_b 1.000000000
## 19 0 Prasinophytes Tchla 1.000000000
## 20 0 Chlorophytes Tchla 1.000000000
## 21 0 Cryptophytes Tchla 1.000000000
## 22 0 Diatoms-2 Tchla 1.000000000
## 23 0 Dinoflagellates-1 Tchla 1.000000000
## 24 0 Haptophytes Tchla 1.000000000
## 25 0 Pelagophytes Tchla 1.000000000
## 26 0 Syn Tchla 1.000000000
## 27 6 Dinoflagellates-1 Per 0.559400000
## 28 6 Haptophytes X19but 0.105600000
## 29 6 Pelagophytes X19but 0.645600000
## 30 6 Diatoms-2 Fuco 0.735600000
## 31 6 Haptophytes Fuco 0.446488067
## 32 6 Pelagophytes Fuco 0.913300000
## 33 6 Prasinophytes Neox 0.062000000
## 34 6 Chlorophytes Neox 0.015500000
## 35 6 Prasinophytes Pra 0.255900000
## 36 6 Prasinophytes Viol 0.086801321
## 37 6 Chlorophytes Viol 0.037000000
## 38 6 Haptophytes X19hex 0.645300000
## 39 6 Cryptophytes Allo 0.320300000
## 40 6 Prasinophytes Zea 0.059400000
## 41 6 Chlorophytes Zea 0.055500000
## 42 6 Syn Zea 1.036390250
## 43 6 Prasinophytes Chl_b 0.778000000
## 44 6 Chlorophytes Chl_b 0.239900000
## 45 6 Prasinophytes Tchla 1.000000000
## 46 6 Chlorophytes Tchla 1.000000000
## 47 6 Cryptophytes Tchla 1.000000000
## 48 6 Diatoms-2 Tchla 1.000000000
## 49 6 Dinoflagellates-1 Tchla 1.000000000
## 50 6 Haptophytes Tchla 1.000000000
## 51 6 Pelagophytes Tchla 1.000000000
## 52 6 Syn Tchla 1.000000000
## 53 11 Dinoflagellates-1 Per 0.559400000
## 54 11 Haptophytes X19but 0.105600000
## 55 11 Pelagophytes X19but 0.645600000
## 56 11 Diatoms-2 Fuco 0.735600000
## 57 11 Haptophytes Fuco 0.446488067
## 58 11 Pelagophytes Fuco 0.913300000
## 59 11 Prasinophytes Neox 0.062000000
## 60 11 Chlorophytes Neox 0.015500000
## 61 11 Prasinophytes Pra 0.255900000
## 62 11 Prasinophytes Viol 0.086801321
## 63 11 Chlorophytes Viol 0.037000000
## 64 11 Haptophytes X19hex 0.645300000
## 65 11 Cryptophytes Allo 0.320300000
## 66 11 Prasinophytes Zea 0.059400000
## 67 11 Chlorophytes Zea 0.055500000
## 68 11 Syn Zea 1.036390250
## 69 11 Prasinophytes Chl_b 0.778000000
## 70 11 Chlorophytes Chl_b 0.239900000
## 71 11 Prasinophytes Tchla 1.000000000
## 72 11 Chlorophytes Tchla 1.000000000
## 73 11 Cryptophytes Tchla 1.000000000
## 74 11 Diatoms-2 Tchla 1.000000000
## 75 11 Dinoflagellates-1 Tchla 1.000000000
## 76 11 Haptophytes Tchla 1.000000000
## 77 11 Pelagophytes Tchla 1.000000000
## 78 11 Syn Tchla 1.000000000
## 79 16 Dinoflagellates-1 Per 0.559400000
## 80 16 Haptophytes X19but 0.105600000
## 81 16 Pelagophytes X19but 0.645600000
## 82 16 Diatoms-2 Fuco 0.735600000
## 83 16 Haptophytes Fuco 0.446488067
## 84 16 Pelagophytes Fuco 0.913300000
## 85 16 Prasinophytes Neox 0.062000000
## 86 16 Chlorophytes Neox 0.015500000
## 87 16 Prasinophytes Pra 0.255900000
## 88 16 Prasinophytes Viol 0.086801321
## 89 16 Chlorophytes Viol 0.037000000
## 90 16 Haptophytes X19hex 0.645300000
## 91 16 Cryptophytes Allo 0.320300000
## 92 16 Prasinophytes Zea 0.059400000
## 93 16 Chlorophytes Zea 0.055500000
## 94 16 Syn Zea 1.036390250
## 95 16 Prasinophytes Chl_b 0.778000000
## 96 16 Chlorophytes Chl_b 0.239900000
## 97 16 Prasinophytes Tchla 1.000000000
## 98 16 Chlorophytes Tchla 1.000000000
## 99 16 Cryptophytes Tchla 1.000000000
## 100 16 Diatoms-2 Tchla 1.000000000
## 101 16 Dinoflagellates-1 Tchla 1.000000000
## 102 16 Haptophytes Tchla 1.000000000
## 103 16 Pelagophytes Tchla 1.000000000
## 104 16 Syn Tchla 1.000000000
## 105 21 Dinoflagellates-1 Per 0.559400000
## 106 21 Haptophytes X19but 0.105600000
## 107 21 Pelagophytes X19but 0.645600000
## 108 21 Diatoms-2 Fuco 0.735600000
## 109 21 Haptophytes Fuco 0.446488067
## 110 21 Pelagophytes Fuco 0.913300000
## 111 21 Prasinophytes Neox 0.062000000
## 112 21 Chlorophytes Neox 0.015500000
## 113 21 Prasinophytes Pra 0.255900000
## 114 21 Prasinophytes Viol 0.086801321
## 115 21 Chlorophytes Viol 0.037000000
## 116 21 Haptophytes X19hex 0.645300000
## 117 21 Cryptophytes Allo 0.320300000
## 118 21 Prasinophytes Zea 0.059400000
## 119 21 Chlorophytes Zea 0.055500000
## 120 21 Syn Zea 1.036390250
## 121 21 Prasinophytes Chl_b 0.778000000
## 122 21 Chlorophytes Chl_b 0.239900000
## 123 21 Prasinophytes Tchla 1.000000000
## 124 21 Chlorophytes Tchla 1.000000000
## 125 21 Cryptophytes Tchla 1.000000000
## 126 21 Diatoms-2 Tchla 1.000000000
## 127 21 Dinoflagellates-1 Tchla 1.000000000
## 128 21 Haptophytes Tchla 1.000000000
## 129 21 Pelagophytes Tchla 1.000000000
## 130 21 Syn Tchla 1.000000000
## 131 26 Dinoflagellates-1 Per 0.559400000
## 132 26 Haptophytes X19but 0.105600000
## 133 26 Pelagophytes X19but 0.645600000
## 134 26 Diatoms-2 Fuco 0.735600000
## 135 26 Haptophytes Fuco 0.446488067
## 136 26 Pelagophytes Fuco 0.913300000
## 137 26 Prasinophytes Neox 0.062000000
## 138 26 Chlorophytes Neox 0.015500000
## 139 26 Prasinophytes Pra 0.255900000
## 140 26 Prasinophytes Viol 0.086801321
## 141 26 Chlorophytes Viol 0.037000000
## 142 26 Haptophytes X19hex 0.645300000
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## 2511 485 Chlorophytes Zea 0.006300000
## 2512 485 Syn Zea 0.970800000
## 2513 485 Prasinophytes Chl_b 0.881313552
## 2514 485 Chlorophytes Chl_b 0.166700084
## 2515 485 Prasinophytes Tchla 1.000000000
## 2516 485 Chlorophytes Tchla 1.000000000
## 2517 485 Cryptophytes Tchla 1.000000000
## 2518 485 Diatoms-2 Tchla 1.000000000
## 2519 485 Dinoflagellates-1 Tchla 1.000000000
## 2520 485 Haptophytes Tchla 1.000000000
## 2521 485 Pelagophytes Tchla 1.000000000
## 2522 485 Syn Tchla 1.000000000
## 2523 490 Dinoflagellates-1 Per 0.344146103
## 2524 490 Haptophytes X19but 0.103800000
## 2525 490 Pelagophytes X19but 1.233900000
## 2526 490 Diatoms-2 Fuco 0.738200000
## 2527 490 Haptophytes Fuco 0.453600000
## 2528 490 Pelagophytes Fuco 0.888700000
## 2529 490 Prasinophytes Neox 0.102500000
## 2530 490 Chlorophytes Neox 0.009600000
## 2531 490 Prasinophytes Pra 0.215300000
## 2532 490 Prasinophytes Viol 0.099082940
## 2533 490 Chlorophytes Viol 0.015100000
## 2534 490 Haptophytes X19hex 0.623300000
## 2535 490 Cryptophytes Allo 0.371700000
## 2536 490 Prasinophytes Zea 0.135300000
## 2537 490 Chlorophytes Zea 0.006300000
## 2538 490 Syn Zea 0.970800000
## 2539 490 Prasinophytes Chl_b 0.881313552
## 2540 490 Chlorophytes Chl_b 0.166700084
## 2541 490 Prasinophytes Tchla 1.000000000
## 2542 490 Chlorophytes Tchla 1.000000000
## 2543 490 Cryptophytes Tchla 1.000000000
## 2544 490 Diatoms-2 Tchla 1.000000000
## 2545 490 Dinoflagellates-1 Tchla 1.000000000
## 2546 490 Haptophytes Tchla 1.000000000
## 2547 490 Pelagophytes Tchla 1.000000000
## 2548 490 Syn Tchla 1.000000000
## 2549 495 Dinoflagellates-1 Per 0.344146103
## 2550 495 Haptophytes X19but 0.103800000
## 2551 495 Pelagophytes X19but 1.233900000
## 2552 495 Diatoms-2 Fuco 0.738200000
## 2553 495 Haptophytes Fuco 0.453600000
## 2554 495 Pelagophytes Fuco 0.888700000
## 2555 495 Prasinophytes Neox 0.102500000
## 2556 495 Chlorophytes Neox 0.009600000
## 2557 495 Prasinophytes Pra 0.215300000
## 2558 495 Prasinophytes Viol 0.099082940
## 2559 495 Chlorophytes Viol 0.015100000
## 2560 495 Haptophytes X19hex 0.623300000
## 2561 495 Cryptophytes Allo 0.371700000
## 2562 495 Prasinophytes Zea 0.135300000
## 2563 495 Chlorophytes Zea 0.006300000
## 2564 495 Syn Zea 0.970800000
## 2565 495 Prasinophytes Chl_b 0.881313552
## 2566 495 Chlorophytes Chl_b 0.166700084
## 2567 495 Prasinophytes Tchla 1.000000000
## 2568 495 Chlorophytes Tchla 1.000000000
## 2569 495 Cryptophytes Tchla 1.000000000
## 2570 495 Diatoms-2 Tchla 1.000000000
## 2571 495 Dinoflagellates-1 Tchla 1.000000000
## 2572 495 Haptophytes Tchla 1.000000000
## 2573 495 Pelagophytes Tchla 1.000000000
## 2574 495 Syn Tchla 1.000000000
## 2575 500 Dinoflagellates-1 Per 0.344146103
## 2576 500 Haptophytes X19but 0.103800000
## 2577 500 Pelagophytes X19but 1.233900000
## 2578 500 Diatoms-2 Fuco 0.738200000
## 2579 500 Haptophytes Fuco 0.453600000
## 2580 500 Pelagophytes Fuco 0.888700000
## 2581 500 Prasinophytes Neox 0.102500000
## 2582 500 Chlorophytes Neox 0.009600000
## 2583 500 Prasinophytes Pra 0.215300000
## 2584 500 Prasinophytes Viol 0.099082940
## 2585 500 Chlorophytes Viol 0.015100000
## 2586 500 Haptophytes X19hex 0.623300000
## 2587 500 Cryptophytes Allo 0.371700000
## 2588 500 Prasinophytes Zea 0.135300000
## 2589 500 Chlorophytes Zea 0.006300000
## 2590 500 Syn Zea 0.970800000
## 2591 500 Prasinophytes Chl_b 0.881313552
## 2592 500 Chlorophytes Chl_b 0.166700084
## 2593 500 Prasinophytes Tchla 1.000000000
## 2594 500 Chlorophytes Tchla 1.000000000
## 2595 500 Cryptophytes Tchla 1.000000000
## 2596 500 Diatoms-2 Tchla 1.000000000
## 2597 500 Dinoflagellates-1 Tchla 1.000000000
## 2598 500 Haptophytes Tchla 1.000000000
## 2599 500 Pelagophytes Tchla 1.000000000
## 2600 500 Syn Tchla 1.000000000
##
## $converge_plot