fspls2: A Package to Find Minimal Transcriptional Signatures
Identifies minimal biomarker signatures for predicting phenotypes from multiomic data.
Integrates multiple omics layers, supports internal cross-validation. Supports missing values in predictors and outcomes.
Enables model based imputation of uncertain values.
Supports continuous, binary, multi-class and ordinal outcomes.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
R6, jsonlite, Matrix, glmnet, tidyr, MASS, ggplot2, pROC, binom, confintr, DBI, RSQLite, methods, tibble, ggrepel, RColorBrewer, data.table |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2026-09-12 |
| DOI: |
10.32614/CRAN.package.fspls2 (may not be active yet) |
| Author: |
Lachlan Coin [aut, cre] |
| Maintainer: |
Lachlan Coin <l.coin at imb.uq.edu.au> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| Citation: |
fspls2 citation info |
| Materials: |
NEWS |
| CRAN checks: |
fspls2 results |
Documentation:
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