ebrahim.gof: Goodness-of-Fit and Calibration Tests for Logistic Regression
Provides a unified battery of goodness-of-fit and calibration tests for binary logistic regression, runnable in a single call via 'run.all.gof()'. Around twenty-five tests spanning five decades of literature are aggregated and grouped by the departure each is built to detect: global and standardized statistics, partition tests such as Hosmer-Lemeshow, directed and covariate-space tests, smoothing and resampling tests, and calibration tests. Each is obtained from its own package where installed and attributed to its authors. The package also implements the author's own procedures for sparse data, where the Hosmer-Lemeshow test loses power: the omnibus Ebrahim-Farrington test 'ef.gof()', the directed 'edge.gof()' and its covariate-space variant 'cdef.gof()', the Cauchy-combination ensemble 'edges.gof()', 'DeepGOF-1' (a pretrained convolutional statistic whose level comes from the analyst's own parametric bootstrap rather than from the network), and 'legoft()' (a frozen-weight combination whose weights are fixed offline and ship frozen, so two analysts obtain the same p-value). For penalized (ridge) logistic regression, where shrinkage biases the fitted probabilities and invalidates the usual chi-squared references, the corrected statistics are referred either to a prepivoting bootstrap by 'shrink.gof()' or to a closed-form reference by 'calm.gof()', which needs a single fit and is validated for designs in which the number of predictors is a sizeable fraction of the sample size. For a model fitted elsewhere, 'run.all.external()' tests frozen predictions on validation data, and 'edge.stream()' updates the 'EDGE' test as validation records arrive. 'localize.gof()' and 'localize.external()' name which part of the model is wrong (the intercept, the slope, the link or the covariates) with familywise error control; 'localize.update()' tests each part against the model already updated for the simpler parts, and 'localize.size()' gives the size of each part. For comparison, the projection test of Liu et al. is implemented as 'projection.gof()' and a fast implementation of the adaptive-partition test 'BAGofT' as 'bagoft.fast()'. For Gaussian graphical models, 'ridge_pcor()', 'effective_penalty()', 'extrapolated_ridge()' and 'mps_select()' extract networks from the ridge estimator of a precision matrix and estimate the effective penalty that says which graph such a network estimates. For more details see Hosmer (1980) <doi:10.1080/03610928008827941> and Farrington (1996) <doi:10.1111/j.2517-6161.1996.tb02086.x>.
| Version: | 3.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | CompQuadForm, graphics, grDevices, parallel, stats |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, ResourceSelection, ggplot2, statmod, mgcv, BAGofT, randomForest, dcov, givitiR, glmnet, callr, TH.data |
| Published: | 2026-11-07 |
| DOI: | 10.32614/CRAN.package.ebrahim.gof |
| Author: | Ebrahim Khaled Ebrahim
 [aut, cre],
Mohammad Arashi
[aut] (author of the ridge network functions in R/ridgegraph.R),
Jiawei Zhang [ctb, cph] (author of the BAGofT package code adapted in
R/bagoft_fast.R),
Jie Ding [ctb, cph] (author of the BAGofT package code adapted in
R/bagoft_fast.R),
Yuhong Yang [ctb, cph] (author of the BAGofT package code adapted in
R/bagoft_fast.R) |
| Maintainer: | Ebrahim Khaled Ebrahim <ebrahimkhaled at alexu.edu.eg> |
| BugReports: | https://github.com/ebrahimkhaled/ebrahim.gof/issues |
| License: | GPL-3 |
| URL: | https://ebrahimkhaled.github.io/ebrahim.gof/, https://github.com/ebrahimkhaled/ebrahim.gof |
| NeedsCompilation: | no |
| Citation: | ebrahim.gof citation info |
| Materials: | README, NEWS |
| CRAN checks: | ebrahim.gof results |
Documentation:
Downloads:
| Package source: | ebrahim.gof_3.1.0.tar.gz |
| Windows binaries: | r-devel: ebrahim.gof_2.10.0.zip, r-release: ebrahim.gof_3.0.0.zip, r-oldrel: ebrahim.gof_3.0.0.zip |
| macOS binaries: | r-release (arm64): ebrahim.gof_3.0.0.tgz, r-oldrel (arm64): ebrahim.gof_3.0.0.tgz, r-release (x86_64): ebrahim.gof_3.0.0.tgz, r-oldrel (x86_64): ebrahim.gof_3.0.0.tgz |
| Old sources: | ebrahim.gof archive |
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