Cascade: Selection, Reverse-Engineering and Prediction in Cascade Networks

A modeling tool allowing gene selection, reverse engineering, and prediction in cascade networks. Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014) <doi:10.1093/bioinformatics/btt705>.

Version: 2.4
Depends: R (≥ 3.5.0)
Imports: abind, animation, cluster, igraph, lars, lattice, limma, methods, nnls, splines, stats4, tnet, VGAM
Suggests: R.rsp, CascadeData, knitr, testthat (≥ 3.0.0)
Published: 2026-04-30
DOI: 10.32614/CRAN.package.Cascade
Author: Frederic Bertrand ORCID iD [cre, aut], Myriam Maumy-Bertrand ORCID iD [aut], Laurent Vallat [ctb], Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand at lecnam.net>
BugReports: https://github.com/fbertran/Cascade/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://fbertran.github.io/Cascade/, https://github.com/fbertran/Cascade
NeedsCompilation: no
Classification/MSC: 62J05, 62J07, 62J99, 92C42
Citation: Cascade citation info
Materials: README, NEWS
In views: NetworkAnalysis, Omics
CRAN checks: Cascade results

Documentation:

Reference manual: Cascade.html , Cascade.pdf
Vignettes: Cascade: Manual (source)
Cascade: Introduction to Cascade (source)

Downloads:

Package source: Cascade_2.4.tar.gz
Windows binaries: r-devel: Cascade_2.3.zip, r-release: Cascade_2.3.zip, r-oldrel: Cascade_2.3.zip
macOS binaries: r-release (arm64): Cascade_2.3.tgz, r-oldrel (arm64): Cascade_2.3.tgz, r-release (x86_64): Cascade_2.3.tgz, r-oldrel (x86_64): Cascade_2.3.tgz
Old sources: Cascade archive

Reverse dependencies:

Reverse imports: SelectBoost

Linking:

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