Last updated on 2026-10-24 13:52:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 3.66 | 34.95 | 38.61 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 2.97 | 25.37 | 28.34 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 30.33 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 25.62 | OK | |||
| r-devel-windows-x86_64 | 1.1.2 | 6.00 | 61.00 | 67.00 | OK | |
| r-patched-linux-x86_64 | 1.1.2 | 4.18 | 32.26 | 36.44 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 3.88 | 32.85 | 36.73 | OK | |
| r-release-macos-arm64 | 1.1.2 | 1.00 | 12.00 | 13.00 | OK | |
| r-release-macos-x86_64 | 1.1.2 | 3.00 | 39.00 | 42.00 | OK | |
| r-release-windows-x86_64 | 1.1.2 | 5.00 | 58.00 | 63.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.2 | 3.00 | 33.00 | 36.00 | OK | |
| r-oldrel-windows-x86_64 | 1.1.2 | 7.00 | 61.00 | 68.00 | OK |
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in ‘tableeasy-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: smooth_curve
> ### Title: Smooth Curve
> ### Aliases: smooth_curve
>
> ### ** Examples
>
> ## Load Mayo Clinic Primary Biliary Cirrhosis Data
> library(survival)
> library(tableeasy)
> data(pbc)
> ## Check variables
> head(pbc)
id time status trt age sex ascites hepato spiders edema bili chol
1 1 400 2 1 58.76523 f 1 1 1 1.0 14.5 261
2 2 4500 0 1 56.44627 f 0 1 1 0.0 1.1 302
3 3 1012 2 1 70.07255 m 0 0 0 0.5 1.4 176
4 4 1925 2 1 54.74059 f 0 1 1 0.5 1.8 244
5 5 1504 1 2 38.10541 f 0 1 1 0.0 3.4 279
6 6 2503 2 2 66.25873 f 0 1 0 0.0 0.8 248
albumin copper alk.phos ast trig platelet protime stage
1 2.60 156 1718.0 137.95 172 190 12.2 4
2 4.14 54 7394.8 113.52 88 221 10.6 3
3 3.48 210 516.0 96.10 55 151 12.0 4
4 2.54 64 6121.8 60.63 92 183 10.3 4
5 3.53 143 671.0 113.15 72 136 10.9 3
6 3.98 50 944.0 93.00 63 NA 11.0 3
> ##The censored data is not discussed here
> pbc_full <- subset(pbc,status!=0)
> pbc_full$status <- pbc_full$status-1
> ## Make categorical variables factors
> varsToFactor <- c('status','trt','ascites','hepato','spiders','edema','stage','sex')
> pbc_full[varsToFactor] <- lapply(pbc_full[varsToFactor], factor)
>
> ## Moderator variables
> adj_pbc <- c('age','alk.phos','ast')
>
> ## Smooth curve of General linear regression:
> gam <- smooth_curve(x='albumin',
+ y='bili',
+ adj=adj_pbc,
+ data=pbc_full)
> plot(gam$gam,se=TRUE,rug=TRUE,shift=gam$shift)
>
>
> ## Smooth curve of logistic regression:
> gam <- smooth_curve(x = 'albumin',
+ y = 'status',
+ adj = adj_pbc,
+ split_var ='age',
+ div = c(45),
+ data = pbc_full)
> plot(gam$gam[[1]],se=FALSE,rug=TRUE,xlim=c(2,4.5),ylab = 'Adjusted ln ORs for death')
> oldpar <- par(new=TRUE)
> plot(gam$gam[[2]],se=FALSE,rug=TRUE,xlim=c(2,4.5),ylab = 'Adjusted ln ORs for death',lty=2)
> on.exit(par(oldpar))
>
> ## Smooth curve of conditional logistic regression:
> pbc_full <- data.frame(pbc_full,'ytime'=1)
> gam <- smooth_curve(x ='albumin',
+ y_time = 'ytime',
+ y = 'status',
+ adj = adj_pbc,
+ strata = 'trt',
+ data = pbc_full)
>
> termplot(gam,term =c(1),col.term ="black",col.se = "black",se=TRUE,rug=FALSE,
+ ylab="Log ORs for death")
Error in a$specials[[i]] : subscript out of bounds
Calls: termplot ... NextMethod -> predict.coxph -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc