Last updated on 2026-07-11 23:51:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.1 | 7.24 | 273.80 | 281.04 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.1 | 4.83 | 68.99 | 73.82 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 3.0.1 | 12.00 | 432.61 | 444.61 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.0.1 | 11.00 | 480.92 | 491.92 | OK | |
| r-devel-windows-x86_64 | 3.0.1 | 10.00 | 309.00 | 319.00 | OK | |
| r-patched-linux-x86_64 | 3.0.1 | 7.60 | 262.09 | 269.69 | OK | |
| r-release-linux-x86_64 | 3.0.1 | 6.78 | 266.07 | 272.85 | OK | |
| r-release-macos-arm64 | 3.0.1 | 2.00 | 109.00 | 111.00 | OK | |
| r-release-macos-x86_64 | 3.0.1 | 5.00 | 310.00 | 315.00 | OK | |
| r-release-windows-x86_64 | 3.0.1 | 12.00 | 295.00 | 307.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.1 | 2.00 | 102.00 | 104.00 | OK | |
| r-oldrel-macos-x86_64 | 3.0.1 | 5.00 | 279.00 | 284.00 | OK | |
| r-oldrel-windows-x86_64 | 3.0.1 | 13.00 | 409.00 | 422.00 | OK |
Version: 3.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘rPDBapi-structural-bioinformatics.Rmd’ using rmarkdown
Quitting from rPDBapi-structural-bioinformatics.Rmd:1005-1014 [structure-search]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! RCSB search request failed with status : Server error: (500) Internal Server Error
Response content: {
"status" : 500,
"message" : "An unexpected error with status code '500' occurred: Internal Server Error",
"link" : "https://search.rcsb.org/redoc/index.html"
}
---
Backtrace:
▆
1. └─rPDBapi::perform_search(...)
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rPDBapi-structural-bioinformatics.Rmd' failed with diagnostics:
RCSB search request failed with status : Server error: (500) Internal Server Error
Response content: {
"status" : 500,
"message" : "An unexpected error with status code '500' occurred: Internal Server Error",
"link" : "https://search.rcsb.org/redoc/index.html"
}
--- failed re-building ‘rPDBapi-structural-bioinformatics.Rmd’
SUMMARY: processing the following file failed:
‘rPDBapi-structural-bioinformatics.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc