Last updated on 2026-09-23 04:51:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 5.1.0 | 0.34 | 3.99 | 4.33 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 5.1.0 | 6.05 | 163.62 | 169.67 | OK | |
| r-devel-linux-x86_64-fedora-clang | 5.1.0 | 1.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 5.2.0 | 8.00 | 329.89 | 337.89 | ERROR | |
| r-devel-windows-x86_64 | 5.1.0 | 12.00 | 262.00 | 274.00 | OK | |
| r-patched-linux-x86_64 | 5.1.0 | 8.16 | 231.85 | 240.01 | OK | |
| r-release-linux-x86_64 | 5.1.0 | 8.34 | 221.05 | 229.39 | OK | |
| r-release-macos-arm64 | 5.1.0 | 2.00 | 55.00 | 57.00 | OK | |
| r-release-macos-x86_64 | 5.2.0 | 8.00 | 139.00 | 147.00 | OK | |
| r-release-windows-x86_64 | 5.1.0 | 12.00 | 240.00 | 252.00 | OK | |
| r-oldrel-macos-arm64 | 5.1.0 | 2.00 | 58.00 | 60.00 | OK | |
| r-oldrel-macos-x86_64 | 5.2.0 | 7.00 | 385.00 | 392.00 | OK | |
| r-oldrel-windows-x86_64 | 5.1.0 | 14.00 | 309.00 | 323.00 | OK |
Version: 5.1.0
Check: package dependencies
Result: ERROR
Packages required but not available: 'nlmixr2est', 'nlmixr2extra', 'rxode2'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang
Version: 5.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/493s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlmixr2plot)
>
> # Thread policy on CI / CRAN: keep the test process single-threaded so the
> # repeated model fits do not oversubscribe the (small) hosted runners. On CRAN
> # also cap rxode2 within-solve threads to two per CRAN's policy.
> .on_cran <- !identical(Sys.getenv("NOT_CRAN"), "true")
> .on_ci <- isTRUE(as.logical(Sys.getenv("CI", "false")))
> if (.on_ci || .on_cran) {
+ options(Ncpus = 1L)
+ Sys.setenv(TESTTHAT_CPUS = "1")
+ Sys.setenv(TESTTHAT_PARALLEL = "FALSE")
+ }
> if (.on_cran && requireNamespace("rxode2", quietly = TRUE)) {
+ rxode2::setRxThreads(2L)
+ }
>
> # -------------------------------------------------------------------------
> # CI test partitioning
> #
> # Every test file fits real nlmixr2 models, so the full suite is expensive on a
> # single hosted runner. push/PR R-CMD-check runs only the "essential" subset --
> # every test file EXCEPT the slow ones listed in .slow_batches below -- which
> # still exercises the core plotting surface (plot(fit) goodness-of-fit plots,
> # vpcPlot()/traceplot(), augPred() plots and the gglist collection structure).
> #
> # The slow files run separately in the weekly slow-tests workflow, split into
> # batches that run one-at-a-time (non-overlapping). That workflow sets
> # NLMIXR2PLOT_TEST_BATCH=<n> to run only batch n's files.
> #
> # Names are the test file basename with the leading "test-" and trailing ".R"
> # removed (what testthat's `filter` matches). When a test file grows past a few
> # minutes, move it into one of the batches here.
> # -------------------------------------------------------------------------
> .slow_batches <- list(
+ # batch 1 -- heaviest fit-based files (multi-endpoint PK/PD + censored VPC)
+ c("plots-multiple-endpoints", "plots-cens"),
+ # batch 2 -- between-subject-variability plot detail (QQ / correlation /
+ # covariate plots across several fits)
+ c("plots-bsv")
+ )
> .slow_all <- unlist(.slow_batches)
>
> .batch <- Sys.getenv("NLMIXR2PLOT_TEST_BATCH")
>
> .filter <- NULL
> if (nzchar(.batch)) {
+ # Slow-batch mode: run ONLY this batch's slow files.
+ .b <- suppressWarnings(as.integer(.batch))
+ if (is.na(.b) || .b < 1L || .b > length(.slow_batches)) {
+ stop(sprintf("NLMIXR2PLOT_TEST_BATCH=%s out of range (1..%d)", .batch, length(.slow_batches)))
+ }
+ .files <- .slow_batches[[.b]]
+ .filter <- paste0("^(", paste(.files, collapse = "|"), ")$")
+ } else if (.on_ci && !.on_cran && length(.slow_all) > 0L) {
+ # Essential subset on push/PR CI: everything EXCEPT the slow files.
+ .filter <- paste0("^(?!(", paste(.slow_all, collapse = "|"), ")$)")
+ }
> # Locally (and on CRAN) .filter stays NULL -> run everything.
>
> test_check("nlmixr2plot", filter = .filter, perl = TRUE)
Saving _problems/test-model-diagram-1086.R
Error : 'ui' needs to be a rxUi model
Error : 'ui' needs to be a rxUi model
Error : 'ui' needs to be a rxUi model
[ FAIL 1 | WARN 10 | SKIP 6 | PASS 474 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-plots-cens.R:2:3', 'test-plots-multiple-endpoints.R:2:3',
'test-plots-multiple-endpoints.R:117:3', 'test-vpc-missing-dv.R:23:3',
'test-vpc-missing-dv.R:83:3', 'test-vpc-tad-data.R:2:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-model-diagram.R:1086:3'): long products keep their input and elimination parts ──
Expected `as.numeric(Sys.time() - t0, units = "secs")` < 30.
Actual comparison: 32.4 >= 30.0
Difference: 2.4 >= 0
[ FAIL 1 | WARN 10 | SKIP 6 | PASS 474 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc