Last updated on 2026-10-06 17:52:56 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 63.28 | 215.66 | 278.94 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 49.19 | 147.64 | 196.83 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 54.00 | 152.34 | 206.34 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 64.00 | 152.30 | 216.30 | ERROR | |
| r-devel-windows-x86_64 | 0.2.1 | 85.00 | 294.00 | 379.00 | OK | |
| r-patched-linux-x86_64 | 0.2.1 | 67.78 | 192.17 | 259.95 | OK | |
| r-release-linux-x86_64 | 0.2.1 | OK | ||||
| r-release-macos-arm64 | 0.2.1 | 14.00 | 48.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 0.2.1 | 46.00 | 262.00 | 308.00 | OK | |
| r-release-windows-x86_64 | 0.2.1 | 86.00 | 213.00 | 299.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.1 | 13.00 | 56.00 | 69.00 | OK | |
| r-oldrel-macos-x86_64 | 0.2.1 | 44.00 | 224.00 | 268.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.1 | 97.00 | 284.00 | 381.00 | OK |
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(genpca)
Registered S3 method overwritten by 'genpca':
method from
transfer.cross_projector multivarious
Attaching package: 'genpca'
The following object is masked from 'package:base':
truncate
>
> test_check("genpca")
Solving generalized eigenproblem C v = lambda R v...
Preparing constraints...
Applying pre-processing...
Using one-shot eigen decomposition (gmdLA) to extract 1 components...
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 4)...
(Found 1 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Constructing final object...
GPCA finished.
gmdLA: Using primal approach (n >= p)
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 4)...
(Found 1 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Deflation component 1
u norm near zero, stopping power iteration for component 1
Preparing constraints...
Applying pre-processing...
Deflation component 1
Preparing constraints...
Applying pre-processing...
Deflation component 1
Computing top-1 GPLSSVD components via operator (eigencore) ...
Preparing constraints...
Applying pre-processing...
Calculating variance explained for Spectra method...
Constructing final object...
GPCA finished.
Matrix M is not SPD, replacing with identity matrix
Preparing constraints...
Applying pre-processing...
Using one-shot eigen decomposition (gmdLA) to extract 2 components...
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Constructing final object...
Preparing constraints...
Applying pre-processing...
Using randomized block solver to extract 2 components (oversample=2, n_power=1, n_polish=1, tol_polish=1e-04).
Calculating variance explained for randomized method...
Constructing final object...
GPCA finished.
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
gmdLA: Using dual approach (n < p)
Computing factorization for matrix Q
Calculating X R X'...
Calculating F' X R X' F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ou (U = F^{-T} * eigenvectors)...
Calculating ov (V = X' Q U D^{-1})...
Calculating explained variance...
Computing eigen factorization of R...
Computing R^{1/2} C R^{1/2}...
Computing eigendecomposition...
Mapping back: V = R^{-1/2} Z...
Solving generalized eigenproblem C v = lambda R v...
Solving generalized eigenproblem C v = lambda R v...
Matrix R is not SPD, replacing with identity matrix
Solving generalized eigenproblem C v = lambda R v...
Solving generalized eigenproblem C v = lambda R v...
Matrix R is not SPD, replacing with identity matrix
Solving generalized eigenproblem C v = lambda R v...
Attaching package: 'multivarious'
The following object is masked from 'package:testthat':
pass
The following objects are masked from 'package:stats':
residuals, screeplot
The following objects are masked from 'package:base':
transform, truncate
'as(<ddiMatrix>, "dgCMatrix")' is deprecated.
Use 'as(as(., "generalMatrix"), "CsparseMatrix")' instead.
See help("Deprecated") and help("Matrix-deprecated").
Saving _problems/test-gplssvd-op-large-99.R
Extracting component 1/2 [penalty=l1, lambda=0.05]
Extracting component 2/2 [penalty=l1, lambda=0.1]
Extracting component 1/2 [penalty=l1, lambda=0.1]
v_k => all zero, stopping.
Extracting component 1/2 [penalty=l1, lambda=1e+06]
v_k => all zero, stopping.
sigma is 3.00269080945555
sigma is 3.40988208633537
MSE no constraint: 0.2154146
MSE adjacency: 0.2154525
[ FAIL 1 | WARN 83 | SKIP 1 | PASS 1582 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-gplssvd_op.R:4:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-gplssvd-op-large.R:99:3'): irlba backend works beyond the dense fallback threshold ──
Error in `irlba::irlba(A0, nv = k, nu = k, work = max(3 * k, k + 1), tol = if (!is.null(svd_opts$tol)) svd_opts$tol else 1e-07, maxit = if (!is.null(svd_opts$maxitr)) svd_opts$maxitr else 1000, mult = mult_fun, fastpath = FALSE)`: starting vector near the null space
Backtrace:
▆
1. └─genpca::gplssvd_op(X, Y, k = k, svd_backend = "irlba") at test-gplssvd-op-large.R:99:3
2. └─irlba::irlba(...)
[ FAIL 1 | WARN 83 | SKIP 1 | PASS 1582 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [38s/77s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(genpca)
Registered S3 method overwritten by 'genpca':
method from
transfer.cross_projector multivarious
Attaching package: 'genpca'
The following object is masked from 'package:base':
truncate
>
> test_check("genpca")
Solving generalized eigenproblem C v = lambda R v...
Preparing constraints...
Applying pre-processing...
Using one-shot eigen decomposition (gmdLA) to extract 1 components...
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 4)...
(Found 1 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Constructing final object...
GPCA finished.
gmdLA: Using primal approach (n >= p)
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 4)...
(Found 1 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Deflation component 1
u norm near zero, stopping power iteration for component 1
Preparing constraints...
Applying pre-processing...
Deflation component 1
Preparing constraints...
Applying pre-processing...
Deflation component 1
Computing top-1 GPLSSVD components via operator (eigencore) ...
Preparing constraints...
Applying pre-processing...
Calculating variance explained for Spectra method...
Constructing final object...
GPCA finished.
Matrix M is not SPD, replacing with identity matrix
Preparing constraints...
Applying pre-processing...
Using one-shot eigen decomposition (gmdLA) to extract 2 components...
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
Constructing final object...
Preparing constraints...
Applying pre-processing...
Using randomized block solver to extract 2 components (oversample=2, n_power=1, n_polish=1, tol_polish=1e-04).
Calculating variance explained for randomized method...
Constructing final object...
GPCA finished.
gmdLA: Using primal approach (n >= p)
Computing factorization for matrix R
Calculating X'QX...
Calculating F' X'QX F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ov (V = F^{-T} * eigenvectors)...
Calculating ou (U)...
Calculating explained variance...
gmdLA: Using dual approach (n < p)
Computing factorization for matrix Q
Calculating X R X'...
Calculating F' X R X' F...
Performing eigen decomposition on target matrix (dim: 5)...
(Found 2 eigenvalues > tol)
Calculating ou (U = F^{-T} * eigenvectors)...
Calculating ov (V = X' Q U D^{-1})...
Calculating explained variance...
Computing eigen factorization of R...
Computing R^{1/2} C R^{1/2}...
Computing eigendecomposition...
Mapping back: V = R^{-1/2} Z...
Solving generalized eigenproblem C v = lambda R v...
Solving generalized eigenproblem C v = lambda R v...
Matrix R is not SPD, replacing with identity matrix
Solving generalized eigenproblem C v = lambda R v...
Solving generalized eigenproblem C v = lambda R v...
Matrix R is not SPD, replacing with identity matrix
Solving generalized eigenproblem C v = lambda R v...
Attaching package: 'multivarious'
The following object is masked from 'package:testthat':
pass
The following objects are masked from 'package:stats':
residuals, screeplot
The following objects are masked from 'package:base':
transform, truncate
'as(<ddiMatrix>, "dgCMatrix")' is deprecated.
Use 'as(as(., "generalMatrix"), "CsparseMatrix")' instead.
See help("Deprecated") and help("Matrix-deprecated").
Saving _problems/test-gplssvd-op-large-99.R
Extracting component 1/2 [penalty=l1, lambda=0.05]
Extracting component 2/2 [penalty=l1, lambda=0.1]
Extracting component 1/2 [penalty=l1, lambda=0.1]
v_k => all zero, stopping.
Extracting component 1/2 [penalty=l1, lambda=1e+06]
v_k => all zero, stopping.
sigma is 3.00269080945555
sigma is 3.40988208633537
MSE no constraint: 0.2154146
MSE adjacency: 0.2154525
[ FAIL 1 | WARN 73 | SKIP 1 | PASS 1582 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-gplssvd_op.R:4:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-gplssvd-op-large.R:99:3'): irlba backend works beyond the dense fallback threshold ──
Error in `irlba::irlba(A0, nv = k, nu = k, work = max(3 * k, k + 1), tol = if (!is.null(svd_opts$tol)) svd_opts$tol else 1e-07, maxit = if (!is.null(svd_opts$maxitr)) svd_opts$maxitr else 1000, mult = mult_fun, fastpath = FALSE)`: starting vector near the null space
Backtrace:
▆
1. └─genpca::gplssvd_op(X, Y, k = k, svd_backend = "irlba") at test-gplssvd-op-large.R:99:3
2. └─irlba::irlba(...)
[ FAIL 1 | WARN 73 | SKIP 1 | PASS 1582 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc