Last updated on 2026-10-23 23:54:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.5 | 24.63 | 88.71 | 113.34 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.5 | 18.32 | 64.62 | 82.94 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.5 | 20.00 | 61.61 | 81.61 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.5 | 20.00 | 59.98 | 79.98 | OK | |
| r-devel-windows-x86_64 | 0.1.5 | 37.00 | 174.00 | 211.00 | OK | |
| r-patched-linux-x86_64 | 0.1.5 | 24.81 | 77.21 | 102.02 | OK | |
| r-release-linux-x86_64 | 0.1.5 | 22.39 | 75.41 | 97.80 | OK | |
| r-release-macos-arm64 | 0.1.5 | 6.00 | 19.00 | 25.00 | OK | |
| r-release-macos-x86_64 | 0.1.5 | 18.00 | 79.00 | 97.00 | OK | |
| r-release-windows-x86_64 | 0.1.5 | 39.00 | 105.00 | 144.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.5 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.5 | 16.00 | 63.00 | 79.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.5 | 40.00 | 123.00 | 163.00 | OK |
Version: 0.1.5
Check: examples
Result: ERROR
Running examples in ‘ebmstate-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: msfit_generic
> ### Title: Compute subject-specific transition hazards.
> ### Aliases: msfit_generic msfit_generic.default msfit_generic.coxrfx
>
> ### ** Examples
>
> # Compute cumulative hazard rates
> # under a (pre-estimated) empirical Bayes Cox
> # model.
>
> #load simulated data (illness-death model,
> #500 patients) and estimated empirical
> # Bayes Cox model
> data("mstate_data_sample")
> data("coxrfx_object_sample")
>
> # Make objects 'surv' and 'Z'
> # with the data used in the estimation
>
> #outcome data
> surv<-coxrfx_object_sample$surv
>
> #covariate data
> Z<-coxrfx_object_sample$Z
>
> # Build a data frame 'patient_data'
> # with the covariate values for which
> # cumulative hazards are to be computed
> # (patient 1 covariate values in this case).
> # 'patient_data' must have one row for each
> # transition in the model
> # and the same columns as 'Z'. The assignment
> # of transitions to strata (made in the 'strata'
> # column) must follow the original model in
> # 'coxrfx_object_sample'.
>
> patient_data<-mstate_data_sample[mstate_data_sample$id==1,
+ ,drop=FALSE][rep(1,3),]
> patient_data$strata<-patient_data$trans<-1:3
> patient_data<-mstate::expand.covs(patient_data,
+ covs=names(patient_data)[!names(patient_data)%in%
+ c("id","from","to","trans","Tstart","Tstop","time",
+ "to","trans","Tstart","Tstop","time","status",
+ "strata")],append=TRUE)
>
> # compute cumulative hazards
> msfit_object<-msfit_generic(coxrfx_object_sample,
+ patient_data,
+ coxrfx_object_sample$tmat)
Error in a$specials[[i]] : subscript out of bounds
Calls: msfit_generic -> msfit_generic.coxrfx -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc