Last updated on 2026-08-04 04:51:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.10 | 23.24 | 204.03 | 227.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.10 | 16.00 | 147.85 | 163.85 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0.10 | 36.00 | 333.13 | 369.13 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.10 | 16.00 | 133.56 | 149.56 | OK | |
| r-devel-windows-x86_64 | 1.0.10 | 26.00 | 181.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.0.10 | 20.00 | 194.60 | 214.60 | OK | |
| r-release-linux-x86_64 | 1.0.10 | 19.22 | 193.78 | 213.00 | OK | |
| r-release-macos-arm64 | 1.0.10 | 7.00 | 55.00 | 62.00 | OK | |
| r-release-macos-x86_64 | 1.0.10 | 16.00 | 173.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 1.0.10 | 25.00 | 180.00 | 205.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.10 | 6.00 | 46.00 | 52.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.0.10 | 16.00 | 168.00 | 184.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.0.10 | 33.00 | 247.00 | 280.00 | OK |
Version: 1.0.10
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0G5u35’ ‘~/tmp/scratch/Rtmp0WwNUL’
‘~/tmp/scratch/Rtmp0brxvl’ ‘~/tmp/scratch/Rtmp0ubPrO’
‘~/tmp/scratch/Rtmp1N1ZsQ’ ‘~/tmp/scratch/Rtmp2Dttmf’
‘~/tmp/scratch/Rtmp2T6ydK’ ‘~/tmp/scratch/Rtmp2lSD2h’
‘~/tmp/scratch/Rtmp3SyIdO’ ‘~/tmp/scratch/Rtmp4BO1LL’
‘~/tmp/scratch/Rtmp4y4wgE’ ‘~/tmp/scratch/Rtmp5Tr5Fc’
‘~/tmp/scratch/Rtmp5duOPA’ ‘~/tmp/scratch/Rtmp5hmgmz’
‘~/tmp/scratch/Rtmp5rxPcw’ ‘~/tmp/scratch/Rtmp6Mgd3z’
‘~/tmp/scratch/Rtmp6dczEt’ ‘~/tmp/scratch/Rtmp6lIOgR’
‘~/tmp/scratch/Rtmp7NQvml’ ‘~/tmp/scratch/Rtmp7ndHEv’
‘~/tmp/scratch/Rtmp7xLKet’ ‘~/tmp/scratch/Rtmp8Ky0CC’
‘~/tmp/scratch/Rtmp8O6K5b’ ‘~/tmp/scratch/Rtmp8bNcf8’
‘~/tmp/scratch/Rtmp8bb8ny’ ‘~/tmp/scratch/Rtmp8fREvV’
‘~/tmp/scratch/Rtmp8g7bOr’ ‘~/tmp/scratch/Rtmp9Lddhf’
‘~/tmp/scratch/Rtmp9Xqjdz’ ‘~/tmp/scratch/Rtmp9rQSpI’
‘~/tmp/scratch/Rtmp9re9fF’ ‘~/tmp/scratch/Rtmp9s0a83’
‘~/tmp/scratch/RtmpAT36c3’ ‘~/tmp/scratch/RtmpB7MQjA’
‘~/tmp/scratch/RtmpBRNKFR’ ‘~/tmp/scratch/RtmpBbvE2H’
‘~/tmp/scratch/RtmpBiZMF1’ ‘~/tmp/scratch/RtmpBkUsC6’
‘~/tmp/scratch/RtmpBzr3mg’ ‘~/tmp/scratch/RtmpCBfWF3’
‘~/tmp/scratch/RtmpCG1cKv’ ‘~/tmp/scratch/RtmpCiNltB’
‘~/tmp/scratch/RtmpCnU7g1’ ‘~/tmp/scratch/RtmpCpwlfa’
‘~/tmp/scratch/RtmpDeucET’ ‘~/tmp/scratch/RtmpDyByRz’
‘~/tmp/scratch/RtmpE2TXq1’ ‘~/tmp/scratch/RtmpEizp79’
‘~/tmp/scratch/RtmpEoF0SG’ ‘~/tmp/scratch/RtmpF26Rjt’
‘~/tmp/scratch/RtmpF8TTrY’ ‘~/tmp/scratch/RtmpFSo7Aq’
‘~/tmp/scratch/RtmpFfDiI2’ ‘~/tmp/scratch/RtmpGLzc0Q’
‘~/tmp/scratch/RtmpGwSPyq’ ‘~/tmp/scratch/RtmpHXQ8QS’
‘~/tmp/scratch/RtmpHxUhIw’ ‘~/tmp/scratch/RtmpInsJzV’
‘~/tmp/scratch/RtmpJBkgVS’ ‘~/tmp/scratch/RtmpJFXwot’
‘~/tmp/scratch/RtmpJlNFz8’ ‘~/tmp/scratch/RtmpJtoa4I’
‘~/tmp/scratch/RtmpK7SWXK’ ‘~/tmp/scratch/RtmpKia3UZ’
‘~/tmp/scratch/RtmpLDe8Sd’ ‘~/tmp/scratch/RtmpLEAdr9’
‘~/tmp/scratch/RtmpLN1bBY’ ‘~/tmp/scratch/RtmpLY3fcT’
‘~/tmp/scratch/RtmpLpCUEZ’ ‘~/tmp/scratch/RtmpM9nOmJ’
‘~/tmp/scratch/RtmpMB30Ne’ ‘~/tmp/scratch/RtmpMI0fuK’
‘~/tmp/scratch/RtmpMMlZbx’ ‘~/tmp/scratch/RtmpMTQk75’
‘~/tmp/scratch/RtmpMiqd1h’ ‘~/tmp/scratch/RtmpMwC4lI’
‘~/tmp/scratch/RtmpN1eP51’ ‘~/tmp/scratch/RtmpNGsR46’
‘~/tmp/scratch/RtmpNj5HFs’ ‘~/tmp/scratch/RtmpOA2Za2’
‘~/tmp/scratch/RtmpOuLfcF’ ‘~/tmp/scratch/RtmpPDTZQL’
‘~/tmp/scratch/RtmpPlhiO2’ ‘~/tmp/scratch/RtmpRgPqqa’
‘~/tmp/scratch/RtmpRm0iL9’ ‘~/tmp/scratch/RtmpRud0ey’
‘~/tmp/scratch/RtmpSkdqVt’ ‘~/tmp/scratch/RtmpT85QmJ’
‘~/tmp/scratch/RtmpTL6xjw’ ‘~/tmp/scratch/RtmpTfV5kg’
‘~/tmp/scratch/RtmpUE0wMV’ ‘~/tmp/scratch/RtmpVN507z’
‘~/tmp/scratch/RtmpXUT1G3’ ‘~/tmp/scratch/RtmpXhLTjT’
‘~/tmp/scratch/RtmpYvlN2s’ ‘~/tmp/scratch/RtmpZYzug9’
‘~/tmp/scratch/RtmpZhtx17’ ‘~/tmp/scratch/RtmpZsmHvS’
‘~/tmp/scratch/Rtmpab24MS’ ‘~/tmp/scratch/Rtmpboo2A7’
‘~/tmp/scratch/Rtmpc8F52g’ ‘~/tmp/scratch/RtmpcA8MbI’
‘~/tmp/scratch/RtmpcMmURa’ ‘~/tmp/scratch/Rtmpcudid8’
‘~/tmp/scratch/RtmpdjbnCW’ ‘~/tmp/scratch/Rtmpdr5h2P’
‘~/tmp/scratch/RtmpeDK3Bg’ ‘~/tmp/scratch/Rtmpei508e’
‘~/tmp/scratch/RtmpeoyN1b’ ‘~/tmp/scratch/Rtmpes5gKB’
‘~/tmp/scratch/Rtmpfe6QDC’ ‘~/tmp/scratch/RtmpgAWlyH’
‘~/tmp/scratch/RtmpikHYlx’ ‘~/tmp/scratch/Rtmpj5mmfs’
‘~/tmp/scratch/Rtmpjc4qXp’ ‘~/tmp/scratch/Rtmpjqi0JE’
‘~/tmp/scratch/Rtmpk2IpoX’ ‘~/tmp/scratch/RtmpkPFYzt’
‘~/tmp/scratch/RtmpkYBHJk’ ‘~/tmp/scratch/RtmpknL8Vu’
‘~/tmp/scratch/RtmpktZuCx’ ‘~/tmp/scratch/Rtmpkzz17M’
‘~/tmp/scratch/Rtmpm1Ww0A’ ‘~/tmp/scratch/Rtmpm7bRYI’
‘~/tmp/scratch/RtmpmMY0nM’ ‘~/tmp/scratch/RtmpmWM07h’
‘~/tmp/scratch/RtmpmgBrUy’ ‘~/tmp/scratch/RtmpmoDxVm’
‘~/tmp/scratch/Rtmpn1d6bk’ ‘~/tmp/scratch/Rtmpnmqpxt’
‘~/tmp/scratch/Rtmpo3bIC6’ ‘~/tmp/scratch/Rtmpo5QbIO’
‘~/tmp/scratch/RtmpodYjA2’ ‘~/tmp/scratch/RtmppF9QzL’
‘~/tmp/scratch/RtmppIy3Jr’ ‘~/tmp/scratch/RtmppSXqSK’
‘~/tmp/scratch/RtmpplQkkf’ ‘~/tmp/scratch/Rtmppxy6wM’
‘~/tmp/scratch/Rtmpq6POA1’ ‘~/tmp/scratch/RtmpqFO25x’
‘~/tmp/scratch/RtmpqKZTUX’ ‘~/tmp/scratch/RtmpqNOKAj’
‘~/tmp/scratch/Rtmpqf9gw0’ ‘~/tmp/scratch/RtmpqlcFom’
‘~/tmp/scratch/Rtmpqx79qx’ ‘~/tmp/scratch/Rtmpr8Qfmt’
‘~/tmp/scratch/RtmprfCX7P’ ‘~/tmp/scratch/RtmprvluLo’
‘~/tmp/scratch/RtmpsmRqHQ’ ‘~/tmp/scratch/Rtmpsr295L’
‘~/tmp/scratch/RtmpstjDmk’ ‘~/tmp/scratch/Rtmpt15fPn’
‘~/tmp/scratch/RtmptEvBX0’ ‘~/tmp/scratch/RtmptYwRsz’
‘~/tmp/scratch/RtmptbsW2T’ ‘~/tmp/scratch/RtmptvXndJ’
‘~/tmp/scratch/RtmpuQDeEV’ ‘~/tmp/scratch/RtmpueydQ3’
‘~/tmp/scratch/Rtmpv8uS9b’ ‘~/tmp/scratch/RtmpvG6QDw’
‘~/tmp/scratch/RtmpvROvhO’ ‘~/tmp/scratch/RtmpvaPDSt’
‘~/tmp/scratch/RtmpvbiXoK’ ‘~/tmp/scratch/RtmpwDc9gp’
‘~/tmp/scratch/RtmpwYMi8O’ ‘~/tmp/scratch/Rtmpws0UpZ’
‘~/tmp/scratch/RtmpymxeRZ’ ‘~/tmp/scratch/Rtmpyyj41A’
‘~/tmp/scratch/RtmpzPqNw3’ ‘~/tmp/scratch/RtmpzQitMt’
‘~/tmp/scratch/RtmpziaFZG’ ‘~/tmp/scratch/RtmpzjtWtA’
‘~/tmp/scratch/xvfb-run.0znaoW’ ‘~/tmp/scratch/xvfb-run.34OHUP’
‘~/tmp/scratch/xvfb-run.3FpHSf’ ‘~/tmp/scratch/xvfb-run.3fCTQt’
‘~/tmp/scratch/xvfb-run.7LYC49’ ‘~/tmp/scratch/xvfb-run.7fKUP1’
‘~/tmp/scratch/xvfb-run.82bnS6’ ‘~/tmp/scratch/xvfb-run.8y1TsZ’
‘~/tmp/scratch/xvfb-run.AC8rpW’ ‘~/tmp/scratch/xvfb-run.BTA2T3’
‘~/tmp/scratch/xvfb-run.CRHDs3’ ‘~/tmp/scratch/xvfb-run.DGKQV2’
‘~/tmp/scratch/xvfb-run.EC2P25’ ‘~/tmp/scratch/xvfb-run.EDNvfu’
‘~/tmp/scratch/xvfb-run.EGwluy’ ‘~/tmp/scratch/xvfb-run.GNTpOX’
‘~/tmp/scratch/xvfb-run.GQKhDd’ ‘~/tmp/scratch/xvfb-run.GqGwcs’
‘~/tmp/scratch/xvfb-run.H8g1Mq’ ‘~/tmp/scratch/xvfb-run.IcaSYI’
‘~/tmp/scratch/xvfb-run.IlQeCT’ ‘~/tmp/scratch/xvfb-run.JfzIzw’
‘~/tmp/scratch/xvfb-run.LDe1vF’ ‘~/tmp/scratch/xvfb-run.LKmwhU’
‘~/tmp/scratch/xvfb-run.LMrCST’ ‘~/tmp/scratch/xvfb-run.LnBxiJ’
‘~/tmp/scratch/xvfb-run.PSJnZd’ ‘~/tmp/scratch/xvfb-run.PwIXrK’
‘~/tmp/scratch/xvfb-run.Q9Bqp9’ ‘~/tmp/scratch/xvfb-run.QO3w9O’
‘~/tmp/scratch/xvfb-run.SDfqxa’ ‘~/tmp/scratch/xvfb-run.SkyFCv’
‘~/tmp/scratch/xvfb-run.Slr9ZW’ ‘~/tmp/scratch/xvfb-run.TUrK2S’
‘~/tmp/scratch/xvfb-run.TWGiRC’ ‘~/tmp/scratch/xvfb-run.Tm4kck’
‘~/tmp/scratch/xvfb-run.TntG3o’ ‘~/tmp/scratch/xvfb-run.U0JpEB’
‘~/tmp/scratch/xvfb-run.UuSlXx’ ‘~/tmp/scratch/xvfb-run.VFrnuw’
‘~/tmp/scratch/xvfb-run.VtrDxh’ ‘~/tmp/scratch/xvfb-run.W5BL8W’
‘~/tmp/scratch/xvfb-run.XCZ5Mf’ ‘~/tmp/scratch/xvfb-run.XEOazs’
‘~/tmp/scratch/xvfb-run.XI9pAm’ ‘~/tmp/scratch/xvfb-run.YNrroO’
‘~/tmp/scratch/xvfb-run.YiXbg2’ ‘~/tmp/scratch/xvfb-run.ZQySUX’
‘~/tmp/scratch/xvfb-run.ZWxsmp’ ‘~/tmp/scratch/xvfb-run.ZYHucu’
‘~/tmp/scratch/xvfb-run.dUwaQp’ ‘~/tmp/scratch/xvfb-run.dgVfuL’
‘~/tmp/scratch/xvfb-run.fbrKdv’ ‘~/tmp/scratch/xvfb-run.fqFuge’
‘~/tmp/scratch/xvfb-run.gDPj3n’ ‘~/tmp/scratch/xvfb-run.gJe3AA’
‘~/tmp/scratch/xvfb-run.gUUovt’ ‘~/tmp/scratch/xvfb-run.hndM5D’
‘~/tmp/scratch/xvfb-run.ieDkLy’ ‘~/tmp/scratch/xvfb-run.j9CIVy’
‘~/tmp/scratch/xvfb-run.kJy2fJ’ ‘~/tmp/scratch/xvfb-run.n5SSpk’
‘~/tmp/scratch/xvfb-run.oQkNuN’ ‘~/tmp/scratch/xvfb-run.pDo6f4’
‘~/tmp/scratch/xvfb-run.qmdvdP’ ‘~/tmp/scratch/xvfb-run.r5g4Lx’
‘~/tmp/scratch/xvfb-run.sGcDSq’ ‘~/tmp/scratch/xvfb-run.sJev1a’
‘~/tmp/scratch/xvfb-run.sUV9Gp’ ‘~/tmp/scratch/xvfb-run.tyXLog’
‘~/tmp/scratch/xvfb-run.viedsU’ ‘~/tmp/scratch/xvfb-run.wSlYnW’
‘~/tmp/scratch/xvfb-run.x64MCs’ ‘~/tmp/scratch/xvfb-run.ydlEjb’
‘~/tmp/scratch/xvfb-run.yuVpkH’ ‘~/tmp/scratch/xvfb-run.zt6wae’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.10
Check: examples
Result: ERROR
Running examples in ‘SATS-Ex.R’ failed
The error most likely occurred in:
> ### Name: GenerateLMatrix
> ### Title: Generate an L Matrix
> ### Aliases: GenerateLMatrix
>
> ### ** Examples
>
> data(SimData, package="SATS")
>
> Panel_context <- GeneratePanelSize(genomic_information=SimData$PanelEx, Class="SBS",
+ SBS_order="COSMIC")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
Error in myGetSeq(ref.genome, Seq_assay_GRanges) :
Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Calls: GeneratePanelSize -> GeneratePanelSize_SBS -> myGetSeq
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 1.0.10
Check: tests
Result: ERROR
Running ‘testthat.R’ [7s/13s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(SATS)
>
> test_check("SATS")
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'getSeq': there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Saving _problems/test-GeneratePanelSize-14.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-GeneratePanelSize.R:14:1'): (code run outside of `test_that()`) ──
Error in `myGetSeq(ref.genome, Seq_assay_GRanges)`: Make sure package BSgenome.Hsapiens.UCSC.hg19 is loaded
Backtrace:
▆
1. └─SATS::GeneratePanelSize(...) at test-GeneratePanelSize.R:14:1
2. └─SATS:::GeneratePanelSize_SBS(...)
3. └─SATS:::myGetSeq(ref.genome, Seq_assay_GRanges)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64