CRAN Package Check Results for Package Rmonize

Last updated on 2025-06-28 09:49:43 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 13.22 133.47 146.69 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.0 6.61 62.52 69.13 ERROR
r-devel-linux-x86_64-fedora-clang 1.1.0 121.46 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1.0 166.15 ERROR
r-devel-windows-x86_64 1.1.0 14.00 132.00 146.00 NOTE
r-patched-linux-x86_64 NOTE
r-release-linux-x86_64 1.1.0 12.97 122.92 135.89 NOTE
r-release-macos-arm64 1.1.0 69.00 OK
r-release-macos-x86_64 1.1.0 125.00 OK
r-release-windows-x86_64 1.1.0 15.00 135.00 150.00 NOTE
r-oldrel-macos-arm64 1.1.0 71.00 OK
r-oldrel-macos-x86_64 1.1.0 100.00 OK
r-oldrel-windows-x86_64 1.1.0 21.00 179.00 200.00 OK

Check Details

Version: 1.1.0
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: harmonized_dossier_summarize.Rd: valueType_list harmonized_dossier_visualize.Rd: valueType_list Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Note: possible error in 'data_dict_evaluate(dataschema, ': unused argument (as_data_dict_mlstr = TRUE) Note: possible error in 'dataset_evaluate(dataset = pooled_harmonized_dataset, ': unused argument (as_data_dict_mlstr = as_dataschema_mlstr) See ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/Rmonize.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: R code for possible problems
Result: NOTE dataschema_evaluate: possible error in data_dict_evaluate(dataschema, taxonomy, as_data_dict_mlstr = TRUE): unused argument (as_data_dict_mlstr = TRUE) harmonized_dossier_evaluate: possible error in dataset_evaluate(dataset = pooled_harmonized_dataset, data_dict = dataschema, taxonomy = taxonomy, as_data_dict_mlstr = as_dataschema_mlstr): unused argument (as_data_dict_mlstr = as_dataschema_mlstr) Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘Rmonize-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dataschema_evaluate > ### Title: Generate an assessment report for a DataSchema > ### Aliases: dataschema_evaluate > > ### ** Examples > > { + + # use Rmonize_DEMO provided by the package + + library(dplyr) + library(madshapR) # data_dict_filter + + dataschema <- + Rmonize_DEMO$`dataschema - final` %>% + data_dict_filter("name == 'adm_unique_id'") + + dataschema_evaluate(dataschema) + + } Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Some changes to functions in the current version of madshapR may require updates of existing code. To see which functions have changed, please see https://cran.r-project.org/web/packages/madshapR/news/news.html Error in data_dict_evaluate(dataschema, taxonomy, as_data_dict_mlstr = TRUE) : unused argument (as_data_dict_mlstr = TRUE) Calls: dataschema_evaluate Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed as_dataschema_mlstr 4.642 0.069 5.506 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Note: possible error in 'data_dict_evaluate(dataschema, ': unused argument (as_data_dict_mlstr = TRUE) Note: possible error in 'dataset_evaluate(dataset = pooled_harmonized_dataset, ': unused argument (as_data_dict_mlstr = as_dataschema_mlstr) See ‘/data/gannet/ripley/R/packages/tests-clang/Rmonize.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1.0
Check: examples
Result: ERROR Running examples in ‘Rmonize-Ex.R’ failed The error most likely occurred in: > ### Name: dataschema_evaluate > ### Title: Generate an assessment report for a DataSchema > ### Aliases: dataschema_evaluate > > ### ** Examples > > { + + # use Rmonize_DEMO provided by the package + + library(dplyr) + library(madshapR) # data_dict_filter + + dataschema <- + Rmonize_DEMO$`dataschema - final` %>% + data_dict_filter("name == 'adm_unique_id'") + + dataschema_evaluate(dataschema) + + } Attaching package: ‘dplyr’ The following objects are masked from ‘package:stats’: filter, lag The following objects are masked from ‘package:base’: intersect, setdiff, setequal, union Some changes to functions in the current version of madshapR may require updates of existing code. To see which functions have changed, please see https://cran.r-project.org/web/packages/madshapR/news/news.html Error in data_dict_evaluate(dataschema, taxonomy, as_data_dict_mlstr = TRUE) : unused argument (as_data_dict_mlstr = TRUE) Calls: dataschema_evaluate Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1.0
Check: whether package can be installed
Result: WARN Found the following significant warnings: Note: possible error in 'data_dict_evaluate(dataschema, ': unused argument (as_data_dict_mlstr = TRUE) Note: possible error in 'dataset_evaluate(dataset = pooled_harmonized_dataset, ': unused argument (as_data_dict_mlstr = as_dataschema_mlstr) See ‘/data/gannet/ripley/R/packages/tests-devel/Rmonize.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. Flavor: r-devel-linux-x86_64-fedora-gcc