Last updated on 2025-06-13 04:49:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2 | 5.75 | 59.03 | 64.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2 | 4.42 | 42.04 | 46.46 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2 | 102.19 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2 | 96.90 | OK | |||
| r-devel-windows-x86_64 | 1.1.2 | 8.00 | 68.00 | 76.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.2 | 6.01 | 53.40 | 59.41 | OK | |
| r-release-linux-x86_64 | 1.1.2 | 5.15 | 53.15 | 58.30 | OK | |
| r-release-macos-arm64 | 1.1.2 | 32.00 | OK | |||
| r-release-macos-x86_64 | 1.1.2 | 50.00 | OK | |||
| r-release-windows-x86_64 | 1.1.2 | 8.00 | 69.00 | 77.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.2 | 28.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1.2 | 45.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.2 | 9.00 | 86.00 | 95.00 | NOTE |
Version: 1.1.2
Check: examples
Result: ERROR
Running examples in 'MetaComp-Ex.R' failed
The error most likely occurred in:
> ### Name: plot_edge_assignment
> ### Title: Generates a single column ggplot for a taxonomic assignment
> ### table and also outputs a PDF.
> ### Aliases: plot_edge_assignment
>
> ### ** Examples
>
> pa_fpath <- system.file("extdata", "HMP_even//allReads-pangia.list.txt", package="MetaComp")
> pangia_assignment = load_edge_assignment(pa_fpath, type = "pangia")
>
> plot_edge_assignment(pangia_assignment, "phylum", "Pangia", "HMP Even",
+ file.path(tempdir(), "assignment.pdf"))
Error in Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg, :
Graphics API version mismatch
Calls: plot_edge_assignment -> <Anonymous> -> Cairo
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.2
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(MetaComp)
>
> test_check("MetaComp")
[1] "gottcha"
[1] "kraken"
[ FAIL 14 | WARN 7 | SKIP 0 | PASS 114 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeline.R:28:1'): (code run outside of `test_that()`) ─────────
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_pipeline.R:28:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_bwa_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_bwa_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_diamond_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_diamond_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_gottcha_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_gottcha_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_kraken_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_kraken_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_b.R:73:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_b.R:73:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_d.R:73:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_d.R:73:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_g.R:71:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_g.R:71:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_g2.R:71:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_g2.R:71:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_k.R:73:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_k.R:73:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_m.R:73:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_m.R:73:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_merged_assignment_p.R:74:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_merged_assignment(...) at test_plot_merged_assignment_p.R:74:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_metaphlan_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_metaphlan_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
── Error ('test_plot_pangia_assignment.R:18:1'): (code run outside of `test_that()`) ──
Error in `Cairo(width, height, file, "pdf", pointsize = pointsize, bg = bg,
units = "in", title = title, ...)`: Graphics API version mismatch
Backtrace:
▆
1. └─MetaComp::plot_edge_assignment(...) at test_plot_pangia_assignment.R:18:1
2. └─Cairo::CairoPDF(...)
3. └─Cairo::Cairo(...)
[ FAIL 14 | WARN 7 | SKIP 0 | PASS 114 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.1.2
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64