Last updated on 2026-03-09 22:50:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 7.1.5 | 19.46 | 167.34 | 186.80 | OK | |
| r-devel-linux-x86_64-debian-gcc | 7.1.5 | 12.59 | 113.80 | 126.39 | OK | |
| r-devel-linux-x86_64-fedora-clang | 7.1.5 | 32.00 | 257.06 | 289.06 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 7.1.5 | 32.00 | 262.10 | 294.10 | OK | |
| r-devel-macos-arm64 | 7.1.5 | 5.00 | 44.00 | 49.00 | OK | |
| r-devel-windows-x86_64 | 7.1.5 | 28.00 | 172.00 | 200.00 | ERROR | |
| r-patched-linux-x86_64 | 7.1.5 | 20.83 | 147.90 | 168.73 | OK | |
| r-release-linux-x86_64 | 7.1.5 | 18.89 | 148.71 | 167.60 | OK | |
| r-release-macos-arm64 | 7.1.5 | 5.00 | 50.00 | 55.00 | OK | |
| r-release-macos-x86_64 | 7.1.5 | 13.00 | 228.00 | 241.00 | OK | |
| r-release-windows-x86_64 | 7.1.5 | 23.00 | 184.00 | 207.00 | OK | |
| r-oldrel-macos-arm64 | 7.1.5 | 5.00 | 54.00 | 59.00 | OK | |
| r-oldrel-macos-x86_64 | 7.1.5 | 15.00 | 275.00 | 290.00 | OK | |
| r-oldrel-windows-x86_64 | 7.1.5 | 31.00 | 233.00 | 264.00 | OK |
Version: 7.1.5
Check: examples
Result: ERROR
Running examples in 'BoutrosLab.plotting.general-Ex.R' failed
The error most likely occurred in:
> ### Name: create.multipanelplot
> ### Title: Joins plots together
> ### Aliases: create.multipanelplot
> ### Keywords: hplot
>
> ### ** Examples
>
> set.seed(12345);
> # begin by creating the individual plots which will be combined into a multiplot
> dist <- data.frame(
+ a = rnorm(100, 1),
+ b = rnorm(100, 3),
+ c = rnorm(100, 5)
+ );
>
> simple.data <- data.frame(
+ x = c(dist$a, dist$b, dist$c),
+ y = rep(LETTERS[1:3], each = 100)
+ );
> fill.squares <- matrix(c(1, 0, 0, 0, 1, 0, 0, 0, 1), ncol = 3, byrow = TRUE);
> rownames(fill.squares) <- c("Drug I only", "Drug II only" , "Drugs I & II");
> colnames(fill.squares) <- levels(factor(simple.data$y));
>
> # Create plot # 1
> simple.boxplot <- create.boxplot(
+ formula = x ~ y,
+ data = simple.data,
+ xaxis.lab = c('','',''),
+ main.x = 0.57,
+ ylab.label = 'Sugar Level',
+ xlab.label = '',
+ col = 'lightgrey',
+ xaxis.tck = c(0,0),
+ yaxis.tck = c(1,0),
+ yaxis.lab = seq(-1,8,2) ,
+ yat = seq(-1,8,2),
+ left.padding = 0,
+ right.padding = 0,
+ lwd = 2
+ );
>
> # Create plot # 2
> simple.heatmap <- create.heatmap(
+ x = t(fill.squares),
+ clustering.method = 'none',
+ shrink = 0.8,
+ yaxis.lab = c(3,2,3),
+ yaxis.tck = 1,
+ xaxis.lab = c('A','B','C'),
+ ylab.label = 'Drug Regimen',
+ xlab.label = 'Patient Group',
+ colour.scheme = c("white", "grey20"),
+ fill.colour = "white",
+ print.colour.key = FALSE,
+ left.padding = 0,
+ xaxis.tck = c(1,0),
+ right.padding = 0,
+ xaxis.rot = 0
+ );
>
> create.multipanelplot(
+ # filename = tempfile(pattern = 'Multipanelplot_Simple', fileext = '.tiff'),
+ plot.objects = list(simple.boxplot,simple.heatmap),
+ y.spacing = 1,
+ ylab.axis.padding = 2,
+ main = 'Simple',
+ top.padding = 2,
+ resolution = 200
+ );
Error in basename(x) : a character vector argument expected
Calls: create.multipanelplot ... file_ext -> ifelse -> grepl -> is.factor -> basename
Execution halted
Flavor: r-devel-windows-x86_64
Version: 7.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'PlottingGuide.Rnw' using knitr_notangle
Warning in remind_sweave(if (in.file) input, sweave_lines) :
It seems you are using the Sweave-specific syntax in line(s) 2303, 2363; you may need Sweave2knitr("PlottingGuide.Rnw") to convert it to knitr
Quitting from PlottingGuide.Rnw:2303-2353 [auto-axis-scaling]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `basename()`:
! a character vector argument expected
---
Backtrace:
x
1. \-global create.auto.axis.examples()
2. \-BoutrosLab.plotting.general::create.multipanelplot(...)
3. \-BoutrosLab.plotting.general:::get.legend.height(...)
4. \-tools::file_ext(filename)
5. +-base::ifelse(...)
6. +-base::grepl("^(.*[^.]+.*)[.]([[:alnum:]]+)$", basename(x))
7. | \-base::is.factor(x)
8. \-base::basename(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PlottingGuide.Rnw' failed with diagnostics:
a character vector argument expected
--- failed re-building 'PlottingGuide.Rnw'
SUMMARY: processing the following file failed:
'PlottingGuide.Rnw'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64